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Hello,
I am trying to use Spolpred2, which I gather is implemented in tb-profiler, but I run into an error when the input is a fasta file
```
$ tb-profiler spoligotype --fasta $AMR_PRJS/assembl…
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New term request MRI: tuberculoma by T1, T2 properties (samant_101122000353): UMLS: 0085388
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I was reviewing the cvs files that accompany the heatmaps generated from my rgi-main json files. As my python skills aren't great, I was having trouble compiling the rgi-main results and was using the…
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Hello!
I am starting to test this repo, and I am getting the following issue (ran this twice, same issue):
```
python src/fcgr.py -k 6 --dir-tarfiles data -w 4
Working on salmonella_enterica__01…
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### Model Name
Antituberculosis activity prediction
### Model Description
Prediction of the activity of small molecules against Mycobacterium tuberculosis. This model has been developed by Ersilia …
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Please provide as much information as you can:
For GO-PATHGO alignment
PATHGO:0000241
and PATHGO:0000239
* **Suggested term label:**
1. **symbiont-mediated suppression of host phagosome ma…
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This thread collects declaration of participation to the [Ten Years Reproducibility Challenge](https://rescience.github.io/ten-years/). You can add your own declaration by adding the article your targ…
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### Summary
We have partnered with [BioModels](https://www.ebi.ac.uk/biomodels/) at [EMBL-EBI](https://www.ebi.ac.uk/) (Hinxton) to explore potential ways to incorporate Ersilia's models into well-es…
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Hi,
This looks like a really promising tool. Excited to use it. Unfortunately I have stumbled on the first hurdle!
I am looking to create a multiplex PCR design for Mycobacterium tuberuclosis. …
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When adding a fastani reference to the command-line using "-resume --fastani_ref ncbi_dataset/data/GCF_000195955.2/GCF_000195955.2_ASM19595v2_genomic.fna", do I need to use that entire name (GCF_00019…
DrB-S updated
8 months ago