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### Current Behavior
When using the `--metadata` input, field values with double quotes in them can result in additional double quotes in the output.
Since the metadata is read through csv.DictRe…
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line 40: RUN curl http://data.nextstrain.org/nextstrain.yml --compressed -o nextstrain.yml \
&& conda env create -f nextstrain.yml - curl isn't installed on Mac
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![image](https://github.com/user-attachments/assets/eb9f0b74-e70f-472f-b0fd-49bc8483f4ca)
Updated tree:
![image](https://github.com/user-attachments/assets/b476f010-b20a-4c52-84d3-52408e3cbe60)
…
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### Current Behavior
When loading a nwk file:
```lisp
((A:0.1,(B:0.2,C:0.3,D:0.4)BCD:0.5)ABCD:0.6,(E:0.7,F:0.8)EF:0.9,(G:1.0,H:1.1,I:1.2,J:1.3)GHIJ:1.4)ABCDEFGHIJ:1.5;
```
The tree is displ…
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### Context
When working across machines with incongruent augur major versions, I get an error:
```
ERROR: Augur version incompatibility detected: \
the JSON builds/wuhan/muts.json was generat…
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Work breakdown:
- [x] update `useDataFetch` code to pull groups data when given appropriate arguments
- [x] update `useDataFetch` code to transform groups data into expected shape
- [x] update `/…
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XEC+G2060A(Orf1a:A599T)+C23277T(S:T572I)
GISAID query: G2060A, C23277T,C18657T,-14106 (may include more -s as convergent going on)
No. of seqs: 7(Australia 4(SA,QLD), Netherlands 1 Sweden 1 UK 1)
…
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### Current Behavior
[slack context](https://bedfordlab.slack.com/archives/C0K3GS3J8/p1721783848746329)
Data was being indexed by `strain`, but the node names in the tree were drawn from `access…
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Reported by @tsibley [here](https://github.com/nextstrain/nextclade/pull/1455#issuecomment-2140691617)
> External datasets like this are tagged "community", e.g.
>
> ![image](https://github.com/…
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Attempting to upload a dataset without the required permissions looks like:
```
$ nextstrain remote upload ...
Error: Permission denied
Are you logged in as the correct user? Current user: XXX
…