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Have data in a non-default group of the user (but belonging to that user).
Run the metadata populate workflow.
First step, where the bulkmap annotation is created is successful.
Second step, wher…
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Steps needed on idr-next for NGFF upgrade.
NB: current checklist is for actions on idr-testing (newly redeployed on 10th Oct)
Detailed workflow is at https://github.com/IDR/omero-mkngff/issues/2 but …
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see: https://forum.image.sc/t/omero-pyramid-generation-time/33463/21
> I copied a folder, which has three nested folders, to my “watchDir”. As I expected, the importing
of the images started autom…
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Hi there,
When running the cell segmentation task, the function requires a parameter called `ChannelInputModel`.
One could attach either `label` or `wavelength` as the input.
However, when execut…
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Somewhere to record prep notes, scripts etc.
# Import and prep steps:
Some of these steps use proposed features in https://github.com/ome/training-scripts/pull/88. (Need to use that PR):
- I…
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Hi Alex,
thanks for the updated Omero package. I tried to integrate the new version today into our Omero system, but am really struggling with this. I think there are some naming inconsistencies, t…
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I could not find any functions specified in documentation to export and import images via python. I can see that, I would be able to render image, but if I want to download a list of .scn images under…
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We are hoping to automate more checks. Having simcheck automatically save the data in a machine parseable form would be very useful.
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In omero-web, I think there may be a race when this :
./bin/omero config set omero.web.server_list "[[\"omero_server\", 4064, \"omero\"]]"
can be called before the omero user is in the database…
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The ImageJ-OMERO code needs to convert between `ome.units.quantity` and `omero.model` units. I wrote [a utility class to do it](https://github.com/imagej/imagej-omero/blob/cdf0b77b579b15f039e3955c3712…