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Hi, I am trying to run neofuse and I am having trouble with building STAR index. So I was wondering if you could help me with this.
Firstly, I have pulled the icbi/neofuse image successfully and t…
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### Description of bug
We use BCL Convert to demux Illumina data into a subdirectory of the flowcell's initial runfolder. e.g. if the folder was:
`/path/to/fiowcells/123456_NS5001234_01234_ABCD…
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### Description of bug
I am currently testing the latest version of Multiqc before a version bump to our production pipelines. Our current version (1.14) works with our integration tests, however, t…
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### Description of bug
Hi,
I have recently used NanoPlot 1.41.6 and tried to ingest the NanoStat.txt summary files into the multiQC report using v1.15 but kept receiving `[WARNING] No analysis re…
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**Is your feature request related to a problem? Please describe.**
Many wrappers are untested. This is not good. Writing tests for them *en bloc* will not work because of the sheer number. This must …
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```
AttributeError: module 'collections' has no attribute 'Mapping'
============================================================
[ERROR ] multiqc : Oops! The 'optitype' MultiQC module brok…
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Hi,
The readme mentions that t1k post analysis steps can do copynumber and novel SNP detection. Is there any detail regarding how to do the tasks? There is a t1k-copynumber.py, but I am not sure if…
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### Description of bug
Hi @vladsavelyev and @ewels
MultQC 1.17 fails to detect fastp files - the same works with MultiQC 1.16
I will attach the verbose output from MultiQC 1.16 as a comment so…
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### Description of bug
If htseq-count output files contain more than the two standard columns `feature` and `count`, they are ignored. The htseq-count user has the option to add further columns for e…
gl-eb updated
11 months ago
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### Description of bug
For reference - posted this on MultiQC slack - https://multiqc.slack.com/archives/C04QMP84K5L/p1697356986698759
I had a question on MultiQC parsing Parabricks bammetrics fi…