icbi-lab NeoFuse issues

icbi-lab / NeoFuse

NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.

GNU General Public License v3.0

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issues

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The results were very different from GRCH37 and GRCH38.

#22 renyuan001 closed 2 months ago
3
IndexError in final_out.py When Processing TPM Values

#21 DongqiangZeng0808 opened 3 months ago
1
asking about the pattern of HLA.txt file for running multiple sample

#20 Tanyaluckk closed 3 weeks ago
2
Questions with STAR index buliding

#19 bobojin46 closed 7 months ago
8
Question about premature stop codon of fusion transcript

#18 whiffen-cann closed 1 year ago
4
Error with NeoFuse execution

#17 Prathyusha-konda closed 1 year ago
2
YARA temp directory issue

#16 alhafidzhamdan closed 1 year ago
12
An error occured while appending TPM values to the final output files

#15 sunsong95 closed 1 year ago
2
Increase sleep from 30 to 120 seconds before running build_temp.py

#14 kevinpryan closed 2 years ago
1
v1.2.1 update

#13 abyssum closed 2 years ago
0
Docker image fails to build

#12 abyssum closed 2 years ago
1
Multiple sample mode Error featureCounts, problem with samtools sort output

#11 kevinpryan closed 2 years ago
7
Should I exclude the low quality bases and adapter sequences from fastq files?

#10 Apprentice2 closed 3 years ago
2
Does the result change between single samples and multiple samples?

#9 Apprentice2 closed 3 years ago
2
downloading reference

#8 eirikhoye closed 2 years ago
4
- replace STAR bam sorting with samtools sorting

#7 riederd closed 3 years ago
0
Adding Arriba "-k" and "-f" options to NeoFuse command line option list

#6 fdkuo closed 3 years ago
2
Add read coverage

#5 abyssum opened 3 years ago
0
Add breakpoint columns in final output

#4 abyssum closed 3 years ago
1
Error occured during OptiType run

#3 aditisk closed 3 years ago
12
Minor fix on paragraph 127

#2 kant closed 4 years ago
1
Docker run unknown shorthand flag: 'r' in -rm

#1 pinjouwu9325 closed 3 years ago
8