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Hi Dr. Guan,
I'm running your software on a large genome with ~20% duplicated orthologs as ID'd by BUSCO. The input data are PacBio CLR reads. I am seeing minimal improvements on duplicates, can yo…
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On tst orthologs:[] array is missing.
https://api.tst.glygen.org/protein/detail/P14210-1/
![Screenshot 2024-08-22 at 1 30 02 PM](https://github.com/user-attachments/assets/85a13cb9-6c7c-4ee8-a3d3-…
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http://monarchinitiative.org/gene/NCBIGene:5077
http://monarchinitiative.org/gene/NCBIGene:5077
Not only are there models via phenotype similarity on Phenogrid, but there are also orthologs of PAX3 i…
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Create documents in the Google drive to describe the steps that MGI takes for each of its various imports. I have created a new folder called MGI import documentaition in the Caltech meeting folder. @…
ukemi updated
4 years ago
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Started from discussion on https://github.com/pombase/website/issues/2042
## Summary of what we discussed today
* Cons of current system:
* File naming and organisation might be improved
…
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Hi I am Upasana
I have 200 genome of anopheles sequenced at 30X
I have a list of single copy orthologs that I have generated using proteomes of two reference genomes in Orthofinder. This gave me ar…
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Not really a bug but using an older version of Java results in the below. Perhaps a more graceful Java version detection and/or warning/error message? Newer Java of course works.
```
#### STEP 4: …
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Q1: you are forgetting to connect the sequences.gene_name with the CAI.title.
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Hello all -- I've been doing some test runs using non-KO orthologs, and while they seem to be working as expected, I have not been able to locate the snakemake logs. Could you clarify where they're wr…
padbc updated
2 years ago
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## Background
Currently in NGB, user can explore (work with) genes in different ways - e.g. via viewing at the "Browser" or in the "Genes" panel.
It would be convenient not just view info about th…