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This is an old issue (#114) which does require a neat solution.
Orthologs are grouped in search results by their UniProt name (ID) prefix, which usually works but fails sometimes, as it is not fool pr…
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Hello,
I am trying to use the i-ADHoRe tool for human and mouse using the output files from OrthoFinder. For this purpose, I created the `blast_table=Orthologs.list` file, which looks like:
ENSG0000…
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Dear all,
The proposal has been made to obsolete GO:0036132 13-prostaglandin reductase activity (5 EXP annotations: human PTGR1 and orthologs) & replace by GO:0047522 15-oxoprostaglandin 13-oxida…
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Hi I am Upasana
I have 200 genome of anopheles sequenced at 30X
I have a list of single copy orthologs that I have generated using proteomes of two reference genomes in Orthofinder. This gave me ar…
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If our groups are going to be based off of phytozome groups, then i imagine we'll need to build our groups using the same program.
Edit: not [inparanoid](http://inparanoid.sbc.su.se/), thats for th…
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GO:0103064
inositol phosphorylceramide mannosyltransferase activity
SGD orthologs get this as IEA from Rhea.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5558548/
useful for mammalian/fungal…
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From @kkarra
```
Cannot generate a valid list request - more than one class is selected at /usr/local/share/perl/5.18.2/Webservice/InterMine/Query/Roles/Listable.pm line 46.
Webservice::InterMine…
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Hello,
I am getting an error shown below with the test dataset provided by Metalaffa. I tried increasing the latency period to 180 seconds and still I face the same error:-
`
Running MUSiCC...
…
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* **PTHR ID & PTN node:**
PTN000162283 (PTHR43380)
* **Sequences with problematic annotation (ID + gene/protein name):**
Human P12694 and orthologs
* **Type of Issue: Erroneous source or err…
sjm41 updated
6 months ago
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For the MVP, we want to simplify things as much we can, and having organisms from multiple taxonomies can be very complicated, because of gene orthologs, different conventions in naming and coordinate…