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Objectives of the tool:
- Create a subdirectory to store the essential information (files) needed for review
- Create a Tiered and Annotated report table that makes it more clear which fusion cand…
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If ever there was a term I'd like to see retired forever, it's 'peptide'. Especially if used the way you're using it. That term has a loaded history, and one that has pretty much never been properly d…
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Hi,
thanks for the code. How can I generate only peptides (smaller proteins) using transfer learning, can I finetune (valid_data) on peptides or is there some tweak etc? thanks!
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e.g. it would be nice to have Infos like mass and charge in there as well
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Hello,
I recently uploaded a few Mpox sequences into the the web version of Nextclade.
I noticed several of these had a OPG069:45-167 frame shift flagged.
![Screenshot 2024-09-04 120716](https:/…
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Hiya!
Thanks for such a wonderful package. I'm working with a lot of peptides that I order from GenScript. A lot of these have modifications or are non-natural amino acids (see [here](https://www.g…
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A script that converts a peptide file into a GTF/GFF file. The input for it should be a GFF/GTF file, a fasta file, and a tab delimited file.
The output:
A GFF file of mapped peptides. It should show…
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definition:
intersection_of: CHEBI:16670 ! peptide
intersection_of: has_role CHEBI:33281 ! antimicrobial agent
Example of use:
GO:0002775 ! antimicrobial peptide production [DEF: "The synthesis or …
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Thanks for amazing notebook!
Support for cyclic peptides was recently proposed here:
https://www.biorxiv.org/content/10.1101/2023.02.25.529956v1
It's already supported in ColabDesign but not in…
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My test results were as follows:
![image](https://github.com/user-attachments/assets/fe1e45d0-8889-43a3-9c5a-8291bdcb8ab5)
![image](https://github.com/user-attachments/assets/6bb3d799-9931-4d43-a96c…