Rappsilber-Laboratory xiFDR issues

Rappsilber-Laboratory / xiFDR

Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs

Apache License 2.0

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issues

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Version 2.3.2

#45 lutzfischer closed 1 week ago
0
document EC filter, fix table

#44 grandrea opened 2 weeks ago
0
Version 2.3

#43 lutzfischer closed 1 month ago
0
Version 2.2.3 -

#42 lutzfischer closed 1 month ago
0
changed defaults for command line interface to be in line with GUI

#41 lutzfischer closed 3 months ago
0
Version 2.2.2

#40 lutzfischer closed 3 months ago
0
invalid <cvParam></cvParam> in mzIdentML output

#39 colin-combe opened 5 months ago
6
Are "peptide link" and "peptide position" 0-based or 1-based?

#38 michabirklbauer closed 3 months ago
7
2.2

#37 lutzfischer closed 3 months ago
0
Update status text when calculating FDR

#36 z3rone opened 9 months ago
0
describe mzIdentML writing fix

#35 grandrea closed 1 year ago
0
Ag documentation

#34 grandrea closed 1 year ago
0
xiFDR CSV output doesn't match xiSPEC/xiVIEW CSV input

#33 colin-combe opened 1 year ago
2
don't output crosslinks with link position = -1 in mzIdentML as workaround for non-cov.assoc.

#32 colin-combe opened 1 year ago
0
xiFDR parameters

#31 SimpleNumber opened 1 year ago
3
inconsistency re. whether the "crosslink donor" CV term is accompanied by another CV term giving accession

#30 colin-combe opened 1 year ago
1
xiFDR - Error parsing file

#29 jayieh closed 1 year ago
9
Documentation ag

#28 grandrea closed 1 year ago
1
A fatal exception has occurred. Program will exit.

#27 yuanxiaoustc opened 2 years ago
1
Group by search

#26 fjoreilly opened 3 years ago
0
Show TD and DD in the summary of XiFDR

#25 fjoreilly opened 3 years ago
0
can not process csv file from XiSEARCH with xiFDR (Semicolons in FASTA-Header)

#24 frmueller closed 3 years ago
7
Add a progress bar or similar to give the user a feeling how far the analysis currently is.

#23 cforbrig opened 4 years ago
1
Add peptide infos to "peptide pair" file

#22 ludsinn opened 4 years ago
2
Version 1.4.0

#21 lutzfischer closed 4 years ago
0
<Threhold> tag does not show the right cv-param

#20 lutzfischer opened 4 years ago
0
xiFDR use for XlinkX FDR estimation

#19 TaraBartolec closed 4 years ago
3
1.2.34

#18 lutzfischer closed 5 years ago
0
low scoring matches marked as passing threshold

#15 swlenz opened 6 years ago
0
Missing cross-linker mass in csv based mzid

#14 swlenz opened 6 years ago
0
Multiple FASTA files and mzIdentML

#16 lutzfischer opened 6 years ago
1
Non standard enzymes in mzIdentML

#17 lutzfischer opened 6 years ago
1
merge

#13 lutzfischer closed 6 years ago
0
Version 1.0.16

#12 lutzfischer closed 7 years ago
0
Empty columns in XiFDR links file

#11 ludsinn opened 7 years ago
0
Export failure in PSMs file

#10 ludsinn closed 4 years ago
1
Expand export options i.e. what information shall be included

#9 ludsinn opened 7 years ago
0
spelling mistake in option lengthgroups

#8 lutzfischer closed 7 years ago
0
Partially wrong score calculation for links

#7 lutzfischer closed 7 years ago
0
CSV-Files can now be read in successively and will be merged into one

#6 lutzfischer closed 7 years ago
0
Changed Version to 1.0.12

#5 lutzfischer closed 7 years ago
0
Merge

#4 lutzfischer closed 7 years ago
0
INFO: error:org.postgresql.util.PSQLException: An I/O error occured while sending to the backend.

#3 ludsinn closed 7 years ago
0
Merges latest changes up to version 1.0.10

#2 lutzfischer closed 8 years ago
0
merged latest changes and update to version 1.0.8

#1 lutzfischer closed 8 years ago
0