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- tutorials shiny https://shiny.rstudio.com/tutorial/
- hello world shiny app
- dat files to rdata (bfabric) https://fgcz-bfabric.uzh.ch/bfabric/userlab/show-application.html?applicationId=155…
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Label-free quantification
Label-free quantification is a method that aims to determine the relative amount of proteins in two or more biological samples. It may be based on precursor signal intensity…
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Hello,
trying to analyze samples that have been a) acquired with a 120min LC gradient and b) acquired with a 60min LC gradient.
The spectra from a) work well with msgf+. However, the spectra from b)…
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Hi,
I recently try GO-plotter for drawing spectra, and it crashed into this error when loading data. Could you please fix this bug?
Many thanks.
![image](https://github.com/DICP-1809/GP-Plotter/as…
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Quantitative Behavior of Mass Spectrometers
To apply the theory we learnt in the last chapters of this unit to quantitative analyses with mass spectrometers, we need to think about the limitations th…
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It was already decided to allow multiple representations (txt, json, csv, hdf...) of the new spectral library format, based on a common framework (required (meta)data, controlled vocabulary...). In th…
RalfG updated
11 months ago
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Hi,
I did some more testing and wanted to investigate some AlphaPept vs MaxQuant results in AlphaViz.
Here I noticed that the intensity values for MS2 fragments are different. More specifically, the…
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I'm getting an uncaught exception when trying to use ms2rescore.feature_generators.ms2pip.DeepLCFeatureGenerator. The error happens when there are not enough peptides in psm_list for the calibration s…
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Hi, I have a peptidomics run with a DB with pre-digested peptides, including those with one missed cleavage. I have recently discovered `-ignoreMetCleavage 1 -enzyme 9`, which I have started using. Af…
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Dear Authors,
Thank you very much for providing this nice tool. I was trying to run pNovo using your wrapper. I could successfully run the tool and produce the results. According to the user-guide …