compomics ms2rescore issues

compomics / ms2rescore

Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

https://ms2rescore.readthedocs.io

Apache License 2.0

39 stars 14 forks source link

issues

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Reports of error in `freeze_support` with Windows installer

#154 RalfG opened 1 day ago
0
Target-decoy competition settings

#153 MatteoLacki opened 4 weeks ago
0
pepXML or mzIdentML from Comet

#152 jke000 opened 1 month ago
0
DeepLCFeatureGenerator multiprocessing issue when number of processes is more than 1

#151 vrkosk opened 1 month ago
0
MS2PIPFeatureGenerator and DeepLCFeatureGenerator, provide a progress callback

#150 vrkosk opened 1 month ago
0
pyopenms DLL issue

#149 AUldry opened 1 month ago
0
Parameters for rescoring peptidomics data

#148 Dmorgen opened 1 month ago
0
error running rescore - tries to download something?

#147 Dmorgen opened 1 month ago
0
MemoryError with input file containing multiple million PSMs (DIA data)

#146 Pichler98 opened 2 months ago
0
Scipy dependency issue in Windows Installer for v3.0.3

#145 RalfG opened 2 months ago
2
Fixes for MS²Rescore report

#144 ArthurDeclercq closed 2 months ago
0
Docs: Add instructions for fixed terminal modifications

#143 RalfG closed 2 months ago
0
TIMS²Rescore

#142 RalfG opened 2 months ago
0
Use Rust for parsing spectrum files

#141 RalfG closed 2 months ago
0
Could not find matching spectra

#140 JesusCastano01 opened 2 months ago
1
Model slowly downloaded

#139 danyunghsu closed 2 months ago
2
Various minor improvements

#138 RalfG closed 2 months ago
0
Various minor improvements

#137 RalfG closed 3 months ago
0
MSMS Parsing with MaxQuant

#136 JesusCastano01 opened 3 months ago
3
Add user control for whether models are downloaded automatically

#135 vrkosk opened 3 months ago
2
Specify custom model directory in MS2PIPFeatureGenerator

#134 vrkosk closed 3 months ago
0
downgrade pyteomics version in pyproject.toml

#133 ArthurDeclercq closed 3 months ago
1
Pull main in timsRescore

#132 ArthurDeclercq closed 3 months ago
0
Uncaught exception in DeepLCFeatureGenerator if not enough peptides for calibration set

#130 vrkosk opened 3 months ago
2
Persistent warning about OPENMS_DATA_PATH

#129 vrkosk closed 3 months ago
4
Fatal pickling exception when using [UNIMOD:nn] identifier in ProForma string

#128 vrkosk closed 3 months ago
7
Update README.md

#127 RalfG closed 3 months ago
0
Cannot resolve mass for invalid amino acid

#126 ArthurDeclercq closed 3 months ago
1
Adding peptide n-terminal fixed modification

#125 XiuyuanChen1 closed 3 months ago
1
Add feature descriptions to documentation

#124 Guitou1 closed 3 months ago
1
Fix GUI on Linux systems

#123 RalfG closed 4 months ago
0
Extend support for timsTOF instruments

#122 RalfG closed 3 months ago
0
merge im2deep into timsrescore branch

#121 ArthurDeclercq closed 4 months ago
0
Update IM key when parsing spectra

#120 jonasscheid closed 4 months ago
1
Better handle exceptions when generating report

#119 RalfG closed 5 months ago
0
GUI crashes on linux system

#118 ArthurDeclercq closed 4 months ago
1
When using Percolator with more than 128 threads, MS2Rescore returns empty pout files

#117 tivdnbos opened 6 months ago
0
ms2rescore graphical user interface

#116 DaliJarboui closed 5 months ago
1
Issue with QC report for percolator

#114 juslm closed 2 months ago
0
Update DeepLC integration to send PSMList object instead of peprec dataframe

#113 RalfG opened 7 months ago
0
Support different levels of confidence estimates when using mokapot

#112 jonasscheid opened 7 months ago
2
Lack of documentation on the command line interface

#111 Guitou1 closed 7 months ago
2
Finalize documentation for 3.0

#110 RalfG closed 7 months ago
0
Percolator [WinError 2] The system cannot find the file specified with the .pin

#109 NicolasProvencher closed 7 months ago
3
Prepec modification error: Multiple modifications per site not supported in Peptide Record format.

#108 NicolasProvencher opened 7 months ago
6
Cannot resolve mass for modification

#107 MatteoLacki closed 3 months ago
11
Correctly handle peptides with invalid residues (BJOUXZ)

#106 RalfG closed 2 months ago
2
Add lower-rank filtering option

#105 RalfG opened 7 months ago
0
Improve logging of modification mapping functionality

#104 RalfG opened 8 months ago
0
Better logging for modification mapping; fix pyOpenMS issue in Dockerfile

#103 ArthurDeclercq closed 8 months ago
0