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compomics
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ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
https://ms2rescore.readthedocs.io
Apache License 2.0
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14
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Fix build of Windows PyInstaller
#102
RalfG
closed
8 months ago
0
Install v3.0.0b4 from Windows .exe, failed to run with "Cannot find XGBoost Library in the candidate path"
#101
vrkosk
closed
8 months ago
1
Suggestions for Ion mobility MS data
#100
frankligy
opened
8 months ago
2
WIP: Move inferring of spectrum path to parsing psm list?
#99
RalfG
opened
8 months ago
0
Config file for maxquant example in v3.0.0-dev4
#98
veitveit
opened
9 months ago
1
Multiple id input files
#97
ArthurDeclercq
closed
8 months ago
0
Add and update examples (move data to external site, add config files)
#96
RalfG
closed
9 months ago
0
Add `ionmob` feature generator
#95
RalfG
closed
9 months ago
0
MS-GF+ms2rescore pipeline doesn't run
#94
Hassan-1991
closed
7 months ago
1
issue with installation
#93
Parniyan-M
closed
7 months ago
2
Modification and flanking amino acid information absent from final output (pout) file
#92
Hassan-1991
closed
8 months ago
1
Created msamanda.py and updated __init__.py
#91
louisebuur
closed
10 months ago
0
Couldn't parse MaxQuant modifications in "Modified Sequence" column in CLI
#90
widmersimon
closed
7 months ago
1
Not able to run ms2resore through command line for this repo examples
#89
rolivella
closed
8 months ago
6
Tkinter gui
#87
ArthurDeclercq
closed
1 year ago
1
Suggest correction for comet pin file
#86
progistar
closed
8 months ago
1
Issue in selecting the mgf file of the spectrum file in GUI
#85
eunice1029
closed
7 months ago
1
v3
#84
RalfG
closed
10 months ago
0
Allow rescoring of multiple hits per spectrum
#83
JB91451
opened
1 year ago
1
Error parsing scan number from mgf file
#82
Hassan-1991
closed
8 months ago
1
PTM information is lost in pin and pout
#81
caetera
closed
8 months ago
2
Wrong indexing during parsing MGF titles and retention times
#80
caetera
closed
8 months ago
2
IDFileParserError: Could not map all MGF retention times to spectrum indices (using MSGF+ pipeline)
#79
aarmso
closed
8 months ago
2
Error while running command line ms2rescore
#78
rolivella
closed
1 year ago
1
Plotting fix
#77
ArthurDeclercq
closed
1 year ago
0
Fix gui maxquant modification parsing error
#76
RalfG
closed
1 year ago
0
Fix gui maxquant modification parsing error
#75
ArthurDeclercq
closed
1 year ago
0
Filtering of PSMs from MaxQuant Search
#74
jamc1996
closed
8 months ago
2
Proteome Discoverer node / PSM file support
#73
rolivella
closed
8 months ago
4
Rich CLI output; Percolator changes; minor fixes
#72
RalfG
closed
1 year ago
0
Plotting percolator weights
#71
ArthurDeclercq
closed
1 year ago
3
Comet pin file fixes
#70
ArthurDeclercq
closed
2 years ago
0
MS²Rescore ignores false run percolator flag
#69
ArthurDeclercq
closed
8 months ago
1
Remove temporary setting of NUMEXPR_MAX_THREADS in ms2rescore
#68
RalfG
closed
8 months ago
1
Fix/comet pin
#67
ArthurDeclercq
closed
2 years ago
0
Peaks pipeline update
#66
ArthurDeclercq
closed
2 years ago
0
Add weights plotting to figure plots
#65
ArthurDeclercq
closed
1 year ago
0
remove redundancy mgf title parser
#64
ArthurDeclercq
closed
8 months ago
1
Minor fixes
#63
RalfG
closed
2 years ago
0
GUI shell fix
#62
ArthurDeclercq
closed
2 years ago
0
Ignore FutureWarning and DeprecationWarning in GUI logs
#61
ArthurDeclercq
closed
2 years ago
0
Refactor modification parsing in PeptideShaker pipeline
#60
RalfG
closed
8 months ago
1
install without gui?
#59
Seb-Leb
closed
2 years ago
2
PeptideShaker pipeline
#58
Seb-Leb
closed
9 months ago
1
PeaksXPro output compatibility
#57
ArthurDeclercq
closed
2 years ago
0
peptideshaker pipeline name fix
#56
ArthurDeclercq
closed
2 years ago
0
Percolator subprocess does not run in CLI
#55
ArthurDeclercq
closed
2 years ago
0
PIN pipeline title matching: `ValueError: cannot convert float NaN to integer`
#54
thaumP
closed
8 months ago
2
Error with PEAKS mzid file
#53
nh2tran
closed
8 months ago
13
GUI Windows installation error
#52
nh2tran
closed
2 years ago
2
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