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compomics
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ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
https://ms2rescore.readthedocs.io
Apache License 2.0
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15
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Add functionality to save mokapot models
#200
SamvPy
opened
16 hours ago
0
Pin pyOpenMS
#199
RalfG
closed
1 day ago
0
Pin DeepLC version to <3.1, avoiding calibration bug
#198
RalfG
closed
2 days ago
0
Pin DeepLC version to <3.1, avoiding calibration bug
#197
RalfG
closed
2 days ago
0
Update im2deep utf8 error
#195
ArthurDeclercq
closed
6 days ago
0
which column to use for mokapot generated rescoring results?
#194
frankligy
closed
2 days ago
0
pyo3_runtime.PanicException: called `Result::unwrap()` on an `Err` value: NotCentroided
#193
frankligy
closed
2 days ago
2
Handle None in psm_list['rescoring_features']
#192
rodvrees
opened
2 weeks ago
0
Fix incorrect decoy pattern configuration in docs
#191
rodvrees
closed
2 weeks ago
1
Logging bug in GUI in debug mode
#190
RalfG
opened
2 weeks ago
2
Update dependencies
#189
RalfG
closed
2 weeks ago
0
Fix encoding error in DeepLC logging
#188
RalfG
closed
2 weeks ago
0
Docs: Fix README URLs to documentation pages
#187
RalfG
closed
2 weeks ago
0
Switch to FlashLFQ output from psm_utils
#186
RalfG
closed
2 weeks ago
0
UnicodeEncodeError: 'ascii' codec can't encode characters in position ...
#185
prvst
closed
2 weeks ago
1
support gzipped spectra files
#184
paretje
opened
1 month ago
1
'charmap' codec can't encode characters in position XX
#183
JesusCastano01
closed
2 weeks ago
3
Catch IndexError in Qvality when PEP cannot be calculated
#182
RalfG
closed
1 month ago
0
Minor doc updates
#181
RalfG
closed
1 month ago
0
Fix ruff checks for tutorial notebook
#180
RalfG
closed
1 month ago
0
Spectrum feature generator
#178
ArthurDeclercq
opened
1 month ago
0
pull main in spectrum-feature-generator
#177
ArthurDeclercq
closed
1 month ago
0
Fix bug in TIMS²Rescore configuration priority
#176
RalfG
closed
1 month ago
0
Improve GUI user experience
#175
RalfG
closed
4 weeks ago
0
Fix Windows installer test (missing ionmob dep)
#173
RalfG
closed
1 month ago
0
Fix: Pass IM2Deep config in GUI
#172
ArthurDeclercq
closed
1 month ago
0
im2deep not working with the GUI
#171
AlexandreBurel
closed
1 month ago
1
SSL certificate error
#170
prvst
closed
1 month ago
4
Limit Percolator processes to 128 (fixes #117)
#169
RalfG
closed
1 month ago
0
build and publish docker image
#167
paretje
closed
1 month ago
0
Various issues while processing PeptideShaker mzIdentML results
#165
ofleitas
closed
1 month ago
8
Fix ionmob in Windows installer
#163
RalfG
closed
2 months ago
0
Refactor parsing of precursor data from spectrum files
#162
RalfG
opened
2 months ago
0
TIMS²Rescore-related fixes and improvements
#161
RalfG
closed
2 months ago
0
Update tims2rescore documentation
#160
RalfG
closed
2 months ago
0
Add docs for isobaric formula modifications
#159
RalfG
closed
2 months ago
1
Implement better logging for PSM ID to spectrum ID matching
#158
RalfG
opened
2 months ago
1
Command line tool should pass in fasta file to the rescoring engine (mokapot) to enable the use of other named parameters
#157
MatteoLacki
closed
2 months ago
2
Validate that all modifications are resolvable
#155
RalfG
opened
2 months ago
0
Reports of error in `freeze_support` with Windows installer
#154
RalfG
opened
3 months ago
0
Target-decoy competition settings
#153
MatteoLacki
closed
2 months ago
1
DeepLCFeatureGenerator multiprocessing issue when number of processes is more than 1
#151
vrkosk
opened
4 months ago
2
MS2PIPFeatureGenerator and DeepLCFeatureGenerator, provide a progress callback
#150
vrkosk
opened
4 months ago
1
pyopenms DLL issue
#149
AUldry
closed
1 month ago
1
Parameters for rescoring peptidomics data
#148
Dmorgen
closed
2 months ago
5
error running rescore - tries to download something?
#147
Dmorgen
closed
1 month ago
2
MemoryError with input file containing multiple million PSMs (DIA data)
#146
Pichler98
opened
5 months ago
0
Scipy dependency issue in Windows Installer for v3.0.3
#145
RalfG
closed
1 month ago
2
Fixes for MS²Rescore report
#144
ArthurDeclercq
closed
5 months ago
0
Docs: Add instructions for fixed terminal modifications
#143
RalfG
closed
5 months ago
0
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