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ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
https://ms2rescore.readthedocs.io
Apache License 2.0
39
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14
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Limit charge for one-hot encoded features for charge to limited range
#51
RalfG
closed
8 months ago
1
Allow long-form modification labels in MaxQuant parser
#47
RalfG
closed
2 years ago
0
Avoid pandas deprecation warnings and other minor improvements
#46
ArthurDeclercq
closed
2 years ago
0
Processing PEAKS XPro output using ms2rescore
#44
DavidGZ1
closed
2 years ago
2
Feature/updated gui
#43
ArthurDeclercq
closed
2 years ago
0
Add regex pattern option for MGF TITLE field
#42
ArthurDeclercq
closed
2 years ago
0
Add token to upload action
#40
RalfG
closed
2 years ago
0
v2.0.0
#39
RalfG
closed
2 years ago
0
Failed to install ms2rescore
#38
Peer2011
closed
2 years ago
2
Add GUI and windows installer batch scripts
#37
RalfG
closed
2 years ago
0
MS²Rescore requires at least cascade_config version v0.2.0
#36
RalfG
closed
2 years ago
1
PEAKS support and various fixes/improvements
#35
ArthurDeclercq
closed
2 years ago
0
Allow more flexibility in feature sets configuration
#34
ArthurDeclercq
closed
2 years ago
0
Implementation of get_search_engine_features for PeptideShaker input
#33
KunathBJ
closed
8 months ago
3
MaxQuant can have long-format modification notations; does not work in current implementation
#41
NoeGuilloy
closed
2 years ago
5
Streamlit webserver
#32
RalfG
closed
9 months ago
1
Streamline handling of invalid amino acids (B, J, O, U, X, Z)
#31
RalfG
closed
3 years ago
0
v2.0.0-beta.5
#30
RalfG
closed
3 years ago
0
v2.0.0-beta.4
#29
RalfG
closed
3 years ago
0
v2.0.0-beta.3
#28
RalfG
closed
3 years ago
0
Add flanking amino acids to PIN output
#27
RalfG
closed
8 months ago
1
[Bug] Use Percolator protein-decoy-pattern to generate pin files if provided by user
#26
tivdnbos
closed
3 years ago
2
num_cpus used by MS2PIP
#25
tivdnbos
closed
3 years ago
2
Percolator "Picked protein FDR (-f)" option requires flanking amino acids in PIN peptide column
#24
tivdnbos
closed
3 years ago
5
v2.0.0-beta.2
#23
RalfG
closed
3 years ago
0
Test and prepare publishing to PyPI
#22
RalfG
closed
3 years ago
0
Support for C-terminal modifications
#21
RalfG
closed
8 months ago
1
Add support for C-term mods in MSGF+ and PIN input
#20
RalfG
closed
3 years ago
0
Miscellaneous bugfixes
#19
RalfG
closed
3 years ago
0
Minor improvements, bugfixes and updated docs, following #14 and #17
#18
RalfG
closed
3 years ago
0
Various id_file_parser improvements and fixes
#17
RalfG
closed
3 years ago
0
Add ID file parsers
#16
ArthurDeclercq
closed
2 years ago
0
Update documentation to reflect changes in #14
#15
RalfG
closed
3 years ago
0
Bugfixes and refactoring (main runner, pipelines, configuration handling...)
#14
RalfG
closed
3 years ago
0
[FeatureRequest] add decoy flag to config file
#13
tivdnbos
closed
3 years ago
0
Snapshot v0.3.0.dev1
#12
RalfG
closed
3 years ago
0
ms2rescore error: ms2rescore/tandem_to_rescore.py", line 71, in make_pepfile ; KeyError: '57.02147'
#11
nattzy94
closed
3 years ago
5
Add generic PIN pipeline
#10
RalfG
closed
3 years ago
0
Add generic PIN pipeline
#9
RalfG
closed
3 years ago
0
PeptideShaker pipeline: Propagate observed retention time
#8
RalfG
closed
3 years ago
0
PeptideShaker pipeline: Parse XLS Extended PSM reports
#7
RalfG
closed
3 years ago
0
DeepLC integration
#6
RalfG
closed
4 years ago
0
Update README.md
#5
anasilviacs
closed
5 years ago
0
Path should be based on peprec file instead of mgf
#4
tivdnbos
closed
5 years ago
1
N-terminal modifications should be added according old version of MS2PIP
#3
tivdnbos
closed
5 years ago
1
Updated and cleaned the entire pipeline
#2
anasilviacs
closed
6 years ago
0
Use a config_file
#1
anasilviacs
closed
6 years ago
0
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