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Hi,
I've installed MetAMOS and iMetAMOS on my linux box and tried to run the test pipleine (run_pipeline_test.sh) and got the following warnings and errors:
A few questions:
1) I HAVE definitely inst…
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I am running into errors when using the test_ima.sh script to test my installation of iMetAMOS. The errors read:
Error, provided contig file does not exist: ftp://ftp.ncbi.nih.gov/genomes/Bacteria…
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Hi I'm getting an error during the validate phase running iMetamos:
```
initpipeline -W imetamos -1 UT-1_GTCCGC_L001_R1_001.fastq -2 UT-1_GTCCGC_L001_R2_001.fastq -d /Applications/metAMOS-1.5rc3/Pete…
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Maybe this has been reported before or it is in the pipeline but a quick search here in the issues list didn't show much. This bug is reproduced with the lasted git version.
If phmmer runs with the `…
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Hi,
Recently I tried to assemble several BAC clones one by one. All clones were sequenced by Hiseq2000.
At first, I mapped all reads to BAC and E. coli genome sequences and resultant bam files consis…
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Dear Treangen/metAMOS support team,
After running the commnad "$ python INSTALL.py iMetAMOS". I followed the instructions in "2.2.4
Running the test suit"
$ cd ./Test
$ ./run_pipeline_test.sh
I en…
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Dear metAMOS developers,
I am having an error while running the test suite.
I already installed the pipeline twice but the error persists.
I hope you can help me finding the solution.
Thank you for y…
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Hi everyone,
I've been trying to run the test suite after installing metAMOS from the git clone of 1.5rc3.
```
$ git clone --branch "v1.5rc3" https://github.com/marbl/metAMOS.git
$ mv metAMOS/ metAM…
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Dr. Sergey Koren,
As you suggested in issue 196, I used the mini kraken DB for my analyses.
While executing my following shell script, I received the following error for my samples.
1) I have two s…
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Hello,
metAMOS failed to open model file during the annotate task.
I don't understand why.
I need help, please!
Here, you can find the message error :
Starting metAMOS pipeline
Warning: Celera Ass…