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Hello, the data you gave is the data after processing. Can you give a part of the data that hasn't been processed (or give a link)? The way you handle the data is what's in the utils file?
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Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures
https://openreview.net/forum?id=jSorGn2Tjg
Generative Diffusion Models for Antibody …
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Website: https://www.rcsb.org/
As the PDB is the largest resource for getting protein/nucleotide structures, it would be nice to have it added.
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1)
https://search.foldseek.com/queue/Z2fX2gw_ZuE4fLFe1iI-MSF4W-Sj2jktXz1nvw
I have searched
https://tinyurl.com/39hdture
or
https://tinyurl.com/bdz38eeh
2)
foldseek structureto3didesc…
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Hi! I'm trying to develop a WebApp which carries out some preprocessing of a protein structure downloaded from PDB to prepare it for MD runs and would like to take advantage of ngl's visualization cap…
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- Convincing active hits against SARS-CoV-2 helicase remain elusive despite attempts from many groups and organisations.
- Zhou et al. (2024) https://doi.org/10.1038/s41557-024-01442-y published …
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Hello!
I have a query concerning a specific aspect of protein-ligand systems. In cases where both the protein and ligand are identical, but the final conformation varies due to sampling of the protei…
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I'm trying to use [HuggingFace's ESMFold](https://huggingface.co/facebook/esmfold_v1) to predict 3D protein structures from the protein sequence. I've got a PDB output that loads just fine on the [RCS…
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Thank you for providing an example showing how to run DiffDock-PP inference with PDB files. I was able to run the example you provided, but I'm confused by the output. The pdb files generated by th…
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Currently BioIn detects only the ligands associated with the PDB structures. Although it does not apparently affect the protein processing, many structures have a number of oligosaccharide molecules a…