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### Description of the bug:
The units by which enzymes are incorporated (mmol and g/gDCW) results in low stoichiometric coefficients, low UB for protein exchange reactions constrained by proteomics m…
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I would like to develop some guidelines for new contributors how to name their accession and how and when to create new directories. This has become urgent due to some email discussion about new contr…
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Short title: The `Spectra` Package: a Flexible Infrastructure for Mass Spectrometry Data
Workshop URL: https://github.com/jorainer/SpectraTutorials/
Workshop docker image: https://hub.docker.com/r/j…
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Hi Marcel, @LiNk-NY
## Context
Laurent and I are maintaining the `QFeatures` class that directly inherits from the `MultiAssayExperiement` class.
I have been profiling the `QFeatures` code f…
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### Description
* [x] GCB 2021: 6. September - 9. September
* [x] GCB 2021: Wednesday, September 08, 2021, 2 pm
* [x] 16. August um 10 Uhr (Monday); Test-Presentation
* [x] 18. August um 14 Uhr…
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First, thank you all for making fragpipe available to the community.
Since we rely on batch systems on our HPC clusters, it is hard for our users
to every time run fragpipe interactively by running…
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Hello,
when running FragPipe in headless mode (analyzing a TMT experiment), I get weird TMT channel names. I put an example here: https://oc.embl.de/index.php/s/9iEiAtMw6j0hSMK
In the annotatio…
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Dear MSFragger team,
We have been using your software for a while now and popularity is growing, so thank you for the awesome work! I would also like to congratulate you on winning the recent #ALSM…
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Hi,
The PRIDE team has provided pdf documents for most datasets, which describe basic information about the dataset, author contacts, quality assessments of samples and the results of the assessmen…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/RforMassSpectrometry/MsExperiment/
Confirm the f…