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Relevant to other issues (e.g. #15) but a specific question related to the large numbers of molecules arising from the @kipUNC generative methods. **How do we triage suggestions?**
1) Kostya mentio…
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Hi!
I am running into the same issue as #274. I am runnning philosopher with Comet, PeptideProphet, ProteinProphet, which all proceed without issue. When it gets up to FDR filtering, I get the error…
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Recently I have been exploring the `plot_frequency()`-function in a bit more depth and I found two issues:
1. Sometimes the function yields an error when the `neg`-parameter is set (this does not o…
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HI There
AS a regular user of DIA-NN I thought that I would give it a try in the newest realse of Fragpipe. The problem is that at the end of the analysis I get the error message "failed to execut…
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Trying to analyze glycoproteomic data and received this error:
20:56:17 ERROR: Error delivering events through the bus
java.util.NoSuchElementException: Sticky note not on the bus: com.dmtavt.fra…
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**Describe the bug**
The open search function in Fragpipe (latest version) does not work. When using default open search settings then processing is halted by the error message:
"Count It is a close…
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Dear Nesvi-lab, any thoughts on what might be going on here?
System OS: Windows 10, Architecture: AMD64
Java Info: 1.8.0_242, OpenJDK 64-Bit Server VM, AdoptOpenJDK
Version info:
FragPipe …
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In some cases, such as teaching it is useful to be able to swap x and y as response and explanatory variables. Support for this could be implemented in:
`stat_poly_eq()` and `stat_quant_eq()`
`stat_…
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Hi all,
I was running six data files from timsTOF for DDA LFQ analysis and ended up halting at Percolator step.
Does anyone have a clue on whats this is?
Thanks,
Issued command:
C:\Fragpipe_…
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Hi,
I get this error while running from filter step in the pipeline; (attached my parameter file). Could you help me solve it?
I said no to database search and peptide valdation, as untill thi…