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We (and by that. I really mean I) might need a step-by-step on how to set up the config and run this.
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I am running the following command:
docker run -ti --rm \
-v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/data:ro \
-v /Users/neurolab/Desktop/Test_sub_002_fcmriprep_ciftify:/o…
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Per here: https://fmriprep.readthedocs.io/en/stable/workflows.html?highlight=freesurfer#surface-preprocessing
Freesurfer outputs can be re-used; however fmriprep (appropriately) checks the build-st…
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I'd like to request adding a FreeSurfer-style longitudinal processing option (or documentation about how to do so manually). There's an ever-growing list of longitudinal consortium studies and it'd be…
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## Question/Support Request
I was running fastsurfer on a single participant across different thread counts in docker, however the result was unexpected
Depending on the CPU allocation, the time…
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Thank you for developing such a useful program. This is my first time running RepeatModeler and I'm still working out how to use it to the fullest extent. I'm really glad that you have the "-recoverDi…
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I was able to run the demo on my computer using the smaller dataset (although it took 8 h), but the reconstructed image (`03_07_2023_19_48_28-rec4D.nii.gz`) does not look right. Below is what I see wi…
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Dear OHBA Group,
Thank you very much for all the wonderful tools. I have gone over the documentation, but being new to OSL, I still had some outstanding questions.
I have some task data that ha…
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Hi,
I have been having problems while running RepeatModeler, especially when getting to the LTR pipeline. gt ltrharvester step seems to die due a segmentation fault (guessing because of the size of…
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Hi there,
I'm currently working on subspace reconstruction. I'm wondering would the code in `02_recon` work for subspace reconstruction or is it specific to MRF?
To be more specific, I have a
…