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### Description of the bug
The stage DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER is not running when special characters, such as '-' are in the sample names.
The reason is that `counts` are converte…
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The DESeq2 vignette [recommends using salmon](http://bioconductor.org/packages/3.9/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#transcript-abundance-files-and-tximport-input) counts as input to DESeq2. …
daler updated
4 years ago
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Hey,
running Salmon Quantmerge requires a list of directories that contain the 'quant.sf' file.
However, I (and maybe other people as well) usually change this file to append the sample ID as a pr…
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Hello,
I want to known if it's possible to view salmon quant.sf output in a browser ( IGV, JBROWSE) according to a fasta reference genome and gff file of predicted gene used for salmon mapping.
…
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- [x] identify data steward
- [x] data steward to complete metadata
- [x] data steward to certify metadata records
- [x] internal CADI review of metadata
- [x] obtain dataset from data steward
- [x] c…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
**Describe the bug**
I installed salmon using cmake command
i.e mkdir build/.. cd build... cmake and i encou…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
bulk mode
**Describe the bug**
We have 60 samples made from very low RNA inputs (cell captures) so the librari…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
`salmon`
**Describe the bug**
Running `salmon quant` through my SLURM cluster consistently segfaults. I've att…