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We’ve been thinking about checking if Scanpy’s neighbors backends can benefit from the shortcut, but it seems like PyNNDescent behaves differently (`(n_neighbors - 1) * n_obs` instead of `n_neighbors …
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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
On the recommendation of the lib…
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I provide some code to reproduce the issue:
```
import numpy as np
import scanpy as sc
from spatialdata.datasets import blobs
import matplotlib
import matplotlib.pyplot as plt
import spatialdata_pl…
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Hi,
Really thank you for providing scvi tool in seurat environment.
I recently happened to a problem:
![Weixin Image_20240920003733](https://github.com/user-attachments/assets/747c2c0e-e26f-45c…
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Hello, I'm trying to run the tutorial and I'm getting the following error. I think toytree might have changed its attributes as now I'm getting an error.
```
tree_mod= ana.CompositionalAnalysis…
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https://github.com/scverse/squidpy/blob/16a9885976e24778664c81c05a9b592b2bd4a237/src/squidpy/_docs.py#L222-L223
The documentation for `legend_loc` in `spatial_scatter` refers to `matplotlib.legend.…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
- [X] (option…
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As discussed here https://github.com/scverse/spatialdata/pull/410#discussion_r1430298422 and here https://github.com/scverse/spatialdata/pull/410#discussion_r1441517847, we are considering removing th…
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```python
##
from spatialdata.datasets import blobs
import spatialdata_plot
import matplotlib.pyplot as plt
sdata = blobs()
sdata['blobs_polygons']['column'] = 0
(
sdata.pl.render_imag…
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We should be adding authors of packages registered here to the github org, right?