satijalab seurat-wrappers issues

satijalab / seurat-wrappers

Community-provided extensions to Seurat

GNU General Public License v3.0

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issues

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ValueError: Expected more than 1 value per channel when training, got input size torch.Size([1, 128])

#200 zclecle2 opened 2 weeks ago
1
Allow specification of Python virtual environment

#199 Debilski opened 3 weeks ago
0
FindAllMarkers in CIPR docs

#198 MauKappel opened 1 month ago
0
Unable to open HDF5 file.

#197 cmullen2-web opened 1 month ago
0
Error: No feature overlap between existing object and new layer data

#196 gizembydmr opened 2 months ago
1
miQC: fix "undefined columns selected" if column renamed

#195 kew24 opened 2 months ago
0
Warning: Layer counts isn't present in the assay object; returning NULL

#194 Noralii opened 4 months ago
0
The batch argument for FastMNNIntegration via IntegrateLayers is non-functional

#193 erzakiev opened 4 months ago
0
Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds

#192 FourAlarmFire opened 4 months ago
0
IntegrateLayers using FastMNN gives error: 'batch' must be specified if '...' has only one object

#191 yesitsjess opened 4 months ago
2
Adapt SEraster for Seurat spatial objects

#190 zskylarli opened 5 months ago
6
Error converting Seurat object to cell_data_set, bug fix no longer exists

#189 azurocha opened 5 months ago
1
Alra not using Scaled data

#188 TomLuijts opened 5 months ago
0
Temporary Files

#187 GischD opened 6 months ago
0
Warning in install.packages :package ‘SeuratWrappers’ is not available for this version of R

#186 lmf04 opened 6 months ago
1
past versions of seurat-wrappers that fits seurat v4

#185 Jiayi-Zheng closed 1 month ago
4
Fixed bug with running scVI integration over SCTransformed data

#184 GreenGilad opened 7 months ago
0
Installing in a Conda environment

#183 gkaf89 opened 7 months ago
0
negative extents to matrix

#182 parkjooyoung99 opened 7 months ago
0
Bug report(?) of adding support to v5

#181 JerryZhang-1222 opened 8 months ago
0
Update scVIIntegration to take `StdAssay`/`SCTAssay` as input

#180 dcollins15 closed 8 months ago
4
Fix scVIIntegration

#179 saketkc closed 8 months ago
0
Seurat-wrappers intsallation failure

#178 acaulier opened 8 months ago
4
Velocyto- Seurat - invalid class “LogMap” object: Duplicate rownames not allowed

#177 Ruba-Mahmoud opened 8 months ago
4
Learn_graph error Error: colnames(cds)!=names(cds@clusters[[reduction_method]]$partitions)

#176 coraolpe opened 8 months ago
0
Add a wrapper for scanorama integration method (in a Seurat V5 flavor)

#175 fspecque opened 9 months ago
1
FastMNNIntegration not using "sketch" assay but "RNA" assay

#174 myshu2017-03-14 opened 9 months ago
0
fix a bug in scVIIntegration function

#173 fentouxungui closed 4 months ago
1
Not able to convert loom to seurat

#172 millerkaplanlab opened 10 months ago
5
May I ask the author if there is a way for me to get wrappers that support seruat4?

#171 xiongsircool closed 10 months ago
5
Error in utils

#170 biotech70 opened 10 months ago
0
Please maintain the support of old version Seurat

#169 Landau1994 opened 11 months ago
13
Seurat5 Updates

#168 Gesmira closed 11 months ago
0
rowData: function not defined

#167 bhayete-empress opened 1 year ago
1
Issue with graph_test

#166 apal6 closed 1 year ago
0
Merge multiple instances of the same seurat object where steps were performed in parallel?

#165 rdalbanus closed 1 year ago
1
no slot of name "preprocess_aux"

#164 Li-ZhiD opened 1 year ago
3
API rate limit exceeded error?

#163 organicbrownrice opened 1 year ago
2
Updates to RunBanksy

#162 jleechung closed 6 months ago
5
Error: Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD - RunVelocity()

#161 BenjaminDEMAILLE opened 1 year ago
0
Error using the cluster_cells function while converting an Seurat object in a cds object for monocle3

#160 pyjm opened 1 year ago
4
RunFastMNN Error in normarg_grid(grid, x)

#159 zezhuo opened 1 year ago
7
UCell support

#158 mass-a opened 1 year ago
0
Fix the issue with fastmnn installation and use

#157 inofechm closed 1 year ago
0
#152 Fix Import "fastMNN" function from "batchelor" package

#156 Wang-Cankun closed 1 year ago
0
Failed to install Seurat-Wrappers

#155 Akanagooori closed 1 year ago
2
scVI defaults

#154 adamgayoso closed 1 year ago
1
fixed roxygen reference to batchelor::fastMNN

#153 dbrookeUAB closed 1 year ago
0
Error：undefined exports: [batchelor]{fastMNN}

#152 ShengFang-0829 closed 1 year ago
8
fastTopics wrapper

#151 pcarbo opened 1 year ago
3