satijalab seurat-wrappers issues

satijalab / seurat-wrappers

Community-provided extensions to Seurat

GNU General Public License v3.0

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issues

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[monocle3] Error in converting cell_data_set to Seurat object with function "as.Seurat()"

#207 jcshuy opened 13 hours ago
0
Update README.md to include PaCMAP method from #202

#206 hyhuang00 closed 4 days ago
0
Cannot install seurat wrappers or seuratdata

#205 hviolaphd opened 1 week ago
0
How to merge loom info into a Seurat object?

#204 AndreaYCT opened 1 month ago
0
fixed the error when use `SCT` run `scvi` and set multiple threads

#203 Moonerss opened 1 month ago
0
Add `PaCMAP` to Seurat-Wrappers

#202 hyhuang00 closed 5 days ago
2
Edited the Rmd documentation for better readability and additional instructions

#201 hyhuang00 closed 1 month ago
0
ValueError: Expected more than 1 value per channel when training, got input size torch.Size([1, 128])

#200 zclecle2 opened 2 months ago
1
Allow specification of Python virtual environment

#199 Debilski opened 2 months ago
0
FindAllMarkers in CIPR docs

#198 MauKappel opened 3 months ago
0
Unable to open HDF5 file.

#197 cmullen2-web opened 3 months ago
0
Error: No feature overlap between existing object and new layer data

#196 gizembydmr opened 3 months ago
1
miQC: fix "undefined columns selected" if column renamed

#195 kew24 opened 3 months ago
0
Warning: Layer counts isn't present in the assay object; returning NULL

#194 Noralii opened 6 months ago
0
The batch argument for FastMNNIntegration via IntegrateLayers is non-functional

#193 erzakiev opened 6 months ago
0
Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds

#192 FourAlarmFire opened 6 months ago
0
IntegrateLayers using FastMNN gives error: 'batch' must be specified if '...' has only one object

#191 yesitsjess opened 6 months ago
2
Adapt SEraster for Seurat spatial objects

#190 zskylarli opened 6 months ago
6
Error converting Seurat object to cell_data_set, bug fix no longer exists

#189 azurocha opened 7 months ago
1
Alra not using Scaled data

#188 TomLuijts opened 7 months ago
0
Temporary Files

#187 GischD opened 7 months ago
0
Warning in install.packages :package ‘SeuratWrappers’ is not available for this version of R

#186 lmf04 opened 7 months ago
1
past versions of seurat-wrappers that fits seurat v4

#185 Jiayi-Zheng closed 2 months ago
4
Fixed bug with running scVI integration over SCTransformed data

#184 GreenGilad opened 8 months ago
0
Installing in a Conda environment

#183 gkaf89 opened 9 months ago
0
negative extents to matrix

#182 parkjooyoung99 opened 9 months ago
0
Bug report(?) of adding support to v5

#181 JerryZhang-1222 opened 9 months ago
0
Update scVIIntegration to take `StdAssay`/`SCTAssay` as input

#180 dcollins15 closed 10 months ago
4
Fix scVIIntegration

#179 saketkc closed 10 months ago
0
Seurat-wrappers intsallation failure

#178 acaulier opened 10 months ago
4
Velocyto- Seurat - invalid class “LogMap” object: Duplicate rownames not allowed

#177 Ruba-Mahmoud opened 10 months ago
4
Learn_graph error Error: colnames(cds)!=names(cds@clusters[[reduction_method]]$partitions)

#176 coraolpe opened 10 months ago
0
Add a wrapper for scanorama integration method (in a Seurat V5 flavor)

#175 fspecque opened 10 months ago
1
FastMNNIntegration not using "sketch" assay but "RNA" assay

#174 myshu2017-03-14 opened 11 months ago
0
fix a bug in scVIIntegration function

#173 fentouxungui closed 6 months ago
1
Not able to convert loom to seurat

#172 millerkaplanlab opened 1 year ago
6
May I ask the author if there is a way for me to get wrappers that support seruat4?

#171 xiongsircool closed 1 year ago
5
Error in utils

#170 biotech70 opened 1 year ago
0
Please maintain the support of old version Seurat

#169 Landau1994 opened 1 year ago
13
Seurat5 Updates

#168 Gesmira closed 1 year ago
0
rowData: function not defined

#167 bhayete-empress opened 1 year ago
1
Issue with graph_test

#166 apal6 closed 1 year ago
0
Merge multiple instances of the same seurat object where steps were performed in parallel?

#165 rdalbanus closed 1 year ago
1
no slot of name "preprocess_aux"

#164 Li-ZhiD opened 1 year ago
3
API rate limit exceeded error?

#163 organicbrownrice opened 1 year ago
2
Updates to RunBanksy

#162 jleechung closed 7 months ago
5
Error: Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD - RunVelocity()

#161 BenjaminDEMAILLE opened 1 year ago
0
Error using the cluster_cells function while converting an Seurat object in a cds object for monocle3

#160 pyjm opened 1 year ago
4
RunFastMNN Error in normarg_grid(grid, x)

#159 zezhuo opened 1 year ago
7
UCell support

#158 mass-a opened 1 year ago
0