-
When trying to run STAR-SEQR, I get this error after STAR has finished alignment:
`OSError: [Errno 2] No such file or directory: '/path/to/SAMPLE.Chimeric.out.junction'`
The reported STAR command …
-
Hello,
First off, thank you for the helpful paper and code! I found the paper best explained QTL mapping with BSA experiments out of the papers I have read similar to this.
I was wondering if y…
-
Some users have wanted to do multisort on the variant search results.
For instance, sorting by gnomAD Genomes Frequency brings all the zeros to the top. But if there are a lot of zeros, it would be…
-
Hi all,
Wondering if anyone is receiving (or has received in the past) an "Internal Server Error" when conducting variant search queries within a project/cohort? I have attached a picture of the er…
-
**Is your feature request related to a problem? Please describe.**
Currently when performing a search for variants in a gene across multiple families, it is hard to tell if there is more than 1 varia…
-
As is, starseqr always requires fatqs even if a STAR alignment is provided. If we modify the salmon call to do alignment mode in this scenario we can bypass the fastq requirement
-
Hi there,
I've been trying to use this software to analyze single-cell RNA-seq data. I was able to successfully run the STAR Index generation, and starseqr.py does not appear to crash but is taking…
-
-
**Describe the bug**
When clicking "show reads", the IGV header appears but the variant coordinates are not automatically populated in the search field. Even if I manually enter coordinates, read dat…
-
**Describe the bug**
There seems to be an issue with the Variant Lookup. I tried it for the example (4-88047328-C-T) cited in the Variant Lookup page, as well as a variant tagged in an RGP case (detai…