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Hi! I am having a problem annotating a VCF file of structural variants. I just want to add tags to the INFO field by ID but I get this error:
```
bcftools annotate -a ${ANNOT_FILE}.gz -h ${HDR_FIL…
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The vision: create a series of functions to leverage the elements of VRS to ask whether or not two variants are equivalent, given some definition of equivalence. While there are many potential defini…
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### Description of feature
The pipeline should also be able to predict putative Neo-epitopes based on structural variants (SV). Currently we only support SNVs and small indels. Predicting Neo-epitope…
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Hi,
I've been using exomiser to analyse WGS data for a long time, and it's the first time I notice this behaviour:
with some HPO IDs (in particular HP:0002597 and/or HP:0001626) I get 0 passed varia…
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𭕄 （2D544） is a variant of 小
Might also be useful for handling structurally similar characters like the many variants of 龜
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Hello
I need some suggestions in simulating complex structural variants in Hifi reads file from PacBio
https://downloads.pacbcloud.com/public/dataset/HG002-CpG-methylation-202202/m64011_190830_22…
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This is a list of target implementations that can benefit from a cleanup and optimization of the flash algorithm using the new target flash API implemented in #1205
- [ ] ch32f1 (in dire need, it…
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@jmonlong says we use `vg add` for some structural variant graph stuff.
Looking at the code, `vg add` does not appear to create paths for the alleles of the variants it adds.
This means we can't…
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Hi,
I installed Variant Detective to work on bacterial genomes and found that Claire3 is not working - even with the test dataset.
Any idea what causes this behavior.
I have copied the log below fo…