fritzsedlazeck SURVIVOR issues

fritzsedlazeck / SURVIVOR

Toolset for SV simulation, comparison and filtering

MIT License

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issues

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filtering normal SV from tumor SV

#215 mdiaz09 closed 2 months ago
6
Problem with the Compilation

#214 rl4940 closed 2 months ago
2
Bug found: SV LEN value cutted

#213 leone93 opened 3 months ago
0
How to merge these columns following it from SURVIVOR merge result, and gain the Paragraph software input file

#212 HuTaoJiaZiAckerman opened 3 months ago
0
about the output file, which file does it come from?

#211 Davidseye opened 4 months ago
0
Clarification on derivation of SV length and type

#210 olivia-gc opened 4 months ago
0
I call it "Nested merge"

#209 HuTaoJiaZiAckerman opened 4 months ago
0
simreads endless runtime

#208 bjhunt-git opened 4 months ago
0
Incorrect SVLEN for translocations in VCF file

#207 ethering opened 4 months ago
0
SURVIVOR simSV - number of SVs doesn't correspond to parmas file

#206 ethering opened 5 months ago
0
insertions.fa contains no insertion sequences

#205 ethering opened 5 months ago
3
Merging UKB SV Files

#204 GHawkes93 opened 6 months ago
1
Inaccurate Chain Orientation in Survivor SV Results Merging

#203 zhaowsong opened 7 months ago
0
Incorrect zero-based VCF file

#202 ethering opened 7 months ago
3
no read support or mapping quality info in VCF

#201 heidihyang opened 7 months ago
0
issue with merging sample vcfs already merged by calls from different programs

#200 heidihyang closed 8 months ago
1
Not able to merge insertions

#199 beantkapoor786 opened 10 months ago
5
merge error

#198 Qijie0615 opened 10 months ago
0
Compatability with Duet

#197 mzwaig opened 11 months ago
0
INS POS!=END

#196 jasonbhn opened 11 months ago
0
convertAssemblytics and vcftobed issue

#195 vmukhina opened 12 months ago
0
Does SURVIVOR work for mobile element insertions?

#194 RSWilson1 opened 1 year ago
0
simSV bed output explanation of DEL and INS position

#193 charliechen912ilovbash closed 1 year ago
0
simreads in fastq format

#192 charliechen912ilovbash closed 1 year ago
0
Expected DR field

#191 Akazhiel opened 1 year ago
2
Fix FORMAT fields for SNP variant records

#190 Krannich479 opened 1 year ago
1
VCF header fields missing

#189 Krannich479 opened 1 year ago
3
Are the variants normalized?

#188 Krannich479 closed 1 year ago
1
definition of some parameters when simulate SV

#187 charliechen912ilovbash closed 1 year ago
2
Losing SV calls when merging files

#186 leonvanmierlo opened 1 year ago
1
error merging vcfs

#185 msubirana closed 4 months ago
0
Simulating SV in PacBio reads

#184 priyambial123 opened 1 year ago
6
Merge vcf

#183 priyambial123 opened 1 year ago
1
vcftobed conversion

#182 priyambial123 opened 1 year ago
0
'TRA' in bed2vcf

#181 riasc closed 1 year ago
2
about the result of SURVIVOR

#180 xiaohuli-45 opened 1 year ago
0
The INS is not merged.

#179 wangyzh opened 1 year ago
0
make union

#178 lmanchon opened 1 year ago
2
simreads long runtime

#177 weilu1998 opened 1 year ago
2
Segmentation fault (core dumped) during SURVIVOR merge

#176 sachingadakh opened 1 year ago
7
NUlls for sample names after merging VCFs

#175 maxineliu closed 1 year ago
5
INFO Field

#174 Akazhiel opened 1 year ago
0
SURVIVOR with SNP calls?

#173 markdunning opened 1 year ago
2
SURVIVOR stats not working with Sniffles2 output

#172 tuannguyen8390 closed 1 year ago
2
SURVIVOR convertAssemblytics, issue for "Min size to keep"

#171 Jhuang90 closed 1 year ago
2
Different results with different order in the vcflist

#170 Yuma248 opened 1 year ago
3
Simple Dockerfile to run SURVIVOR

#169 geocarvalho opened 1 year ago
0
Error with merging VCF files for trio SVs

#168 racemore closed 1 year ago
2
Problems with QV after merge

#167 BeaSamma opened 1 year ago
0
SV coordinates merged VCF from Manta and GRIDSS

#166 tgong1 opened 2 years ago
3