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```
Parameters: -genome Zlat.fasta -intact Zlat.fasta.pass.list -all Zlat.fasta.out
-t 60 -q -blast /public/home/cszx_huangxh/biosoftwares/Anaconda3_8/envs/gene_ann
o/bin/
2024年 08月 26日 星期一 21:25…
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@Daniel-Mietchen
```
$ echo -e "\tApis mellifera" | nomer append plazi
[main] INFO org.globalbioticinteractions.nomer.match.TermMatcherRegistry - using matcher [plazi]
[main] INFO org.globalbio…
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Hi all,
I'm not entirely sure how to frame this but while naming a few superfamilies today, I stumbled across two example with a shared residue (%) value over 100:
http://dawson_8080.cathdb.info/sf…
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It appears to me that there are some duplicated rows in the [Acari-standardized-v2 file](https://github.com/njdowdy/tpt-taxonomy/blob/main/Acari/Acari-standardized-v2.csv), for example:
source | ta…
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```
NCBI CDD wrapper
Model after Bioperl (package?)
Try it on GitHub
http://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi?useid1=true&tdata=hits&q
ueries=
End sequence with Two new lines !
…
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I encounter the following error:
```
2024-07-02 17:22:22.977 | INFO | embeddedllm.engine:generate:359 - Generation Request Prompt length: 970, New tokens: 50
2024-07-02 17:22:26.036 | ERROR …
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## Expected Behavior
Superfamily modeled
## Current Behavior
stop at the begining
## Steps to Reproduce (for bugs)
Please make sure to reproduce the issue after a "Factory Reset" in Colab.
If r…
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Hi @jhpoelen
As we talked the ideia is to implement a fuzzy match in nomer.
Here an example from GlobalNames
`echo -e "\tHomo sapens" | nomer append globalnames`
Output:
```tsv
Homo sape…
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@EMTuckerLab @njdowdy in Acari standardized v2 I found:
synonym ```Holothyrus expolitissimus Berlese, 1923``` pointing to accepted name id ```6892347```, however ```6892347``` was not defined in th…
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My understanding is that it contains a part of URL that could be useful at some point. In the example below, to me, the only piece of information that we may re-use is `5b04107a2265c5000fab1b7a`, am I…