-
Some examples here: https://arax.ncats.io/beta/?r=36527
example edge attribute list containing the attribute of interest:
```
--
attribute_type_id: | biolink:aggregator_knowledge_source
value_t…
-
```
x jhu-usc.edu_READ.HumanMethylation450.Level_3.7.3.0/jhu-usc.edu_READ.HumanMethylation450.7.lvl-3.TCGA-07-0227-20A-01D-A39G-05.txt
x jhu-usc.edu_READ.HumanMethylation450.Level_3.7.3.0/jhu-usc.edu_…
-
Hi, I'm seeing a parsing error for `brca_tcga_pan_can_atlas_2018`:
`utils::read.table` chokes too easily on malformed files -- is it worth considering switching to readr/vroom or data.table here to…
-
GDCdownload(query_col_wxs, directory = "TCGA_DATA_DL")
Downloading data for project TCGA-COAD
GDCdownload will download 457 files. A total of 82.8324 MB
Downloading as: Sat_Feb_17_21_15_58_2024.tar…
-
I want to ask if the patches of TCGA and PAIP will be open sourced so others could compare their methods with yours fairly.
-
Am I right in expecting the patch level feature *.pt files (433779 files each containing 256 x 384 tensor) used for pretraining the second stage of HIPT to be present in the `HIPT/3-Self-Supervised-Ev…
-
I am using TCGA-LGG data. I used the following code but getting blank output.
I have saved genes and probesets under genes and probesets.
`MCPcounter.estimate(rna, featuresType = "ENSEMBL_ID",
…
-
If I want to analyze the RNAseq data of TCGA, which data should be used? count or tpm or fpkm?
-
There are parts of the GDCtools code which either make reference to TCGA (in the comments) or directly assume TCGA context (in the code). Both of these are No-Nos, and need to be scrubbed from the co…
-
Hi,
I installed prov-gigapath on Linux and I can run the examples you've shared.
Now I would like to use it to automatically classify tile/slide content, like: does this tile contain cancerous cel? …