issues
search
waldronlab
/
cBioPortalData
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
https://waldronlab.io/cBioPortalData/
30
stars
12
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
clinicalData() .cache, db_collect
#76
kmezhoud
closed
6 months ago
2
API changes?
#75
denoqo
closed
7 months ago
5
Error in retrieving mutation data
#74
twohigjd
closed
8 months ago
2
Data splitting error 'group length is 0 but data length > 0'
#73
darencard
closed
8 months ago
4
study Id not recognized in cBioPortalData function
#72
ZWael
closed
1 year ago
5
cbiodfci access
#71
BiotechPedro
closed
1 year ago
4
Error using cBioportalData on Genie data
#70
ZWael
closed
1 year ago
4
cBioDataPack() fails despite valid studyId
#69
ghost
closed
1 year ago
2
brca_tcga_pan_can_atlas_2018 is failing with `cBioDataPack`
#68
mjsteinbaugh
opened
1 year ago
11
how to use cBioPortalData molecularProfilesIds for all human genes
#67
GeorgiaTsagkogeorga
closed
1 year ago
4
Does the API provide download of variants?
#66
zhongguojie1998
closed
1 year ago
1
geneTable(cbio)
#65
afaissa
closed
1 year ago
1
loadStudy error
#64
gadepallivs
opened
1 year ago
1
Possible mistake in .isNonExp function causes files (CNA etc) to be loaded as metadata?
#63
SRodenburg
closed
1 year ago
4
pancan_pcawg_2020 and pan_origimed_2020
#62
mjsteinbaugh
opened
1 year ago
4
Error trying to obtain mutation data with getDataByGenes
#61
sajo25
closed
1 year ago
1
Unable to import: ... missing value where TRUE/FALSE needed
#60
BiotechPedro
closed
2 years ago
3
Can we make the download URL customizable?
#59
SRodenburg
closed
2 years ago
2
cBioPortalData did not work in custom function
#58
hufanglq
closed
2 years ago
1
how to get molecularData with out entrezGeneIds
#57
limbo1996
closed
2 years ago
3
Methylation & CNA
#56
kmezhoud
closed
2 years ago
1
Kmezhoud cgdsr migration vignette
#55
LiNk-NY
closed
2 years ago
0
getStudies, Cases, Clinicaldata, mRNA, Mutation
#54
kmezhoud
closed
2 years ago
4
Update and rename cgdsMigration.Rmd to cgdsrMigration.Rmd
#53
kmezhoud
closed
2 years ago
5
migrate from cgdsr to cBioPortalData
#52
kmezhoud
closed
2 years ago
4
Update cBioPortal.R
#51
ZWael
closed
2 years ago
3
MAE object missing gene expression data
#50
varsha090597
closed
2 years ago
4
compatibility with paediatric cBio?
#49
andrea-de-micheli
closed
2 years ago
3
Update README.md
#48
LiNk-NY
closed
2 years ago
0
add argument for to disable .check_study_id_building for alt hostnames
#47
LiNk-NY
closed
2 years ago
0
Require R>4.2.0?
#46
Jeff-Gui
closed
2 years ago
1
Creating Python client using bravado results in ValidationErrors
#45
tdeboer-ilmn
closed
2 years ago
2
No lock availabe !
#44
ZheFrench
closed
2 years ago
0
clinicalData does not retrieve all patient data
#43
afaissa
closed
3 years ago
2
clinicalData does not retrieve all patient data
#42
afaissa
closed
3 years ago
3
There is an error in the JSON format of the request payload - R api wrapper
#41
jjgao
closed
3 years ago
2
fix cBioDataPack("brca_mbcproject_wagle_2017")
#40
LiNk-NY
closed
2 years ago
1
update vignettes, refers to #38
#39
LiNk-NY
closed
3 years ago
0
expand vignettes
#38
lwaldron
closed
3 years ago
0
Fusion data unlisted in metadata
#37
LiNk-NY
closed
3 years ago
0
Error in .checkBarcodes(barcodes) : Barcodes must start with 'TCGA'
#36
sahilseth
closed
3 years ago
3
cbio <- cBioPortal() does not work
#35
ryao-mdanderson
closed
3 years ago
10
can't find 'VITAL_STATUS' field in mae clinicalData
#34
biodancerwangzhi
closed
3 years ago
2
Split cBioDataPack func into download and parse
#33
inodb
closed
4 years ago
4
prioritization request for angs_project_painter_2018
#32
lwaldron
closed
3 years ago
2
Working example error
#31
mjsteinbaugh
closed
4 years ago
9
molecularData with hugoGeneSymbol?
#30
xinwei-sher
closed
4 years ago
6
geneTable()
#29
xinwei-sher
closed
4 years ago
1
cBioDataPack Error for cesc_tcga_pan_can_atlas_2018
#28
jebard
closed
3 years ago
4
Fix cBioDataPack error on non-char Patient ID
#27
jucor
closed
4 years ago
2
Next