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I saw in the article that the mRNA expression matrix is filtered according to TMM, while in the code it is filtered by cpm, and the filtering ratio is also different. I would like to know which method…
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It would be nice to be able to download the music here:
```
pierre@Rudloff:~$ youtube-dl "http://www.amazon.com/gp/feature.html?ie=UTF8&docId=1001428681#" -v
[debug] System config: []
[debug] User co…
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New Fields of AVR logs which is not mentioned in Document - https://clouddocs.f5.com/products/extensions/f5-telemetry-streaming/latest/avr.html?highlight=avr%20logs#collecting-data
| Fields |
| --…
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Many players' global rating graphs have incorrect spikes in rating from earlier this year, possibly related to changes for TMM... These spikes should be removed and or replaced with the proper rating.…
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Hi, I think there is an error in the calculation of normalised counts using normalize.counts() when using TMM or RLE.
The function gets normalisation factors using edgeR's calcNormFactors() and div…
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I came across an error running the following call to `scone(run=TRUE)` while running through the Bioc2016 workshop vignette (added `verbose = TRUE` flag):
```
res
ckmah updated
6 years ago
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Hi! I can see from the documentation that deconvSeq uses TMM as a normalization method ( inside get.dge function from EdgeR ). I wonder if it has been tested with other normalization methods and if ot…
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This is all valid composer repository annotations according to official composer documentation and it works in `heroku/buildpacks:20`. We have been migrating recently to `heroku/builder:20/22` and we …
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I am using xCell on PBMC RNAseq data
I am using counts per miilion TMM normalized, the main thing is surpringsly, at the levels of Neutrophils is very low if not, completely absent
I use your ex…