YosefLab scone issues - Githubissues

YosefLab / scone

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BiocParallel Errors

#107 TeodoraTockovska opened 2 years ago
2
CellRanger Metrics

#106 CisnerosFernandez opened 3 years ago
0
QC matrix

#105 HaniJieunKim opened 3 years ago
0
Cell Ranger alignment stats

#104 iwillham opened 4 years ago
3
Deprecated inbuilt datasets for scRNAseq package used in Introduction to SCONE

#103 biancamocanu closed 4 years ago
2
Calling scone with run=TRUE Error

#102 e-arslan opened 5 years ago
1
Error in get_normalized due to no imputation / return_norm = "no"

#101 diyadas opened 5 years ago
3
Error with memory

#100 jgarces02 opened 6 years ago
0
Error in score_matrix(expr = adjusted, eval_pcs = eval_pcs, eval_proj = eval_proj, : NA/Inf/NaN Expression Values

#99 diyadas opened 6 years ago
0
BiocParallel error in scone(run=TRUE): attempt to apply non-function

#98 aarzalluz closed 6 years ago
8
House keeping genes

#97 emmanuelsapin closed 6 years ago
1
friendly error message when negcon params are all FALSE

#96 allonw opened 6 years ago
0
log = TRUE option for get_normalized returns the natural log?

#95 cypranowska closed 6 years ago
2
row indices of NA observations in error message

#94 idot opened 6 years ago
1
'k' must satisfy 0 < k < min(nrow(A), ncol(A))

#93 mbcole opened 6 years ago
0
sconeReport

#92 mbcole opened 6 years ago
0
R-squared

#91 drisso opened 6 years ago
1
Add Helpful Message when Control Gene Lists are Malformed

#90 mbcole opened 6 years ago
0
BUG FIX: if (rezero) { } was called with length(rezero) > 1

#89 HenrikBengtsson closed 6 years ago
1
Too many dependencies?

#88 drisso closed 7 years ago
1
ezbake error when fnr_maxiter = 0

#87 allonw opened 7 years ago
0
scran "sizes" parameter

#86 drisso opened 7 years ago
4
Warning when using default zero option

#85 drisso opened 7 years ago
0
Scaling Function Arguments

#84 mbcole opened 7 years ago
0
SconeExperiment for signature matrix should accept character vectors for poscon and negcon

#83 drisso opened 7 years ago
0
Add wrapper for total count normalization

#82 drisso closed 7 years ago
1
Factor Sample Filter Bug

#81 mbcole closed 7 years ago
1
Error is cryptic when row (gene) variance is 0

#80 deto closed 7 years ago
1
Report fails when expression feature is constant

#79 mbcole opened 7 years ago
0
Export get_bio() and get_batch()

#78 drisso closed 7 years ago
2
Scone not working on R 3.3.2 on MacOS

#77 festeneam closed 7 years ago
4
Memory issues with parallel computing

#76 drisso opened 7 years ago
0
Update sconeReport arguments for compatibility with S4

#75 mbcole closed 7 years ago
0
Fix SCONE Script

#74 mbcole closed 7 years ago
0
added support for scran YosefLab/scone#70

#73 ckmah closed 7 years ago
2
select_methods does not subset score matrices

#72 mbcole closed 7 years ago
1
Additional tests

#71 drisso opened 7 years ago
0
Add wrapper for scran

#70 drisso closed 7 years ago
4
bplapply memory issue when running scone(run=TRUE)

#69 ckmah opened 7 years ago
3
Correct for QC and RUV simultaneously

#68 drisso opened 8 years ago
0
Allow multiple covariates

#67 drisso opened 8 years ago
3
sample filter: default hard cutoffs

#66 allonw opened 8 years ago
0
bug in scone_eval

#65 allonw closed 8 years ago
1
bug in easy bake

#64 allonw closed 8 years ago
1
exception in easybake

#63 allonw closed 8 years ago
1
allow non-default BPPARAM

#62 allonw closed 7 years ago
1
metric_sample_filter interface not backwards compatible?

#61 allonw closed 8 years ago
1
packages httpuv and digest not installed with dependencies

#60 allonw opened 8 years ago
19
Report Design

#59 mbcole closed 8 years ago
1
S4 Interface for SCONE

#58 mbcole closed 7 years ago
2