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YosefLab
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POTENTIAL BUG: bplapply() and globals
#57
HenrikBengtsson
closed
8 years ago
5
Run 4 data sets to evaluate imputation viability / moving ahead
#56
mbcole
closed
8 years ago
1
Stabilize simple imputation for use in primary experiments
#55
mbcole
closed
8 years ago
1
don't compute dist twice in score_matrix()
#54
drisso
closed
8 years ago
1
hdf5 doesn't currently work with multiple cores
#53
drisso
closed
8 years ago
1
R version documentation
#52
TimothyTickle
closed
8 years ago
2
Add argument to preserve zeroes in output matrix
#51
mbcole
closed
8 years ago
0
Added Travis CI
#50
drisso
closed
8 years ago
0
get_normalized wrapper should work without a file
#49
drisso
closed
8 years ago
0
Simplify Factor Sample Filter
#48
mbcole
closed
8 years ago
0
Stabilize PAM param interface
#47
mbcole
closed
8 years ago
1
Restore original par settings upon exiting function.
#46
jdblischak
closed
8 years ago
0
Bug in number of PCs used for correlations?
#45
drisso
closed
8 years ago
1
Variance preserved based on deviance measure (GLM)
#44
drisso
opened
8 years ago
1
Return design matrices
#43
drisso
closed
8 years ago
0
Update scone output
#42
drisso
closed
8 years ago
0
Simplify sample filtering + add gene filtering
#41
drisso
closed
8 years ago
2
factor_sample_filter and metric_sample_filter should not produce pdf's
#40
drisso
closed
8 years ago
0
Adding RLE metric to evaluation
#39
drisso
closed
8 years ago
1
Handling of ties in FQ_FN
#38
drisso
closed
8 years ago
1
PAM Stability error
#37
drisso
closed
8 years ago
3
Better use of params
#36
drisso
closed
8 years ago
1
scone() documentation error - bio argument
#35
majorkazer
closed
8 years ago
3
Complains about confounding even though adjust_batch="no" and adjust_bio="no"
#34
drisso
closed
8 years ago
1
ZINB FNR estimation does not always converge
#33
drisso
closed
8 years ago
2
Return values in biplot
#32
drisso
closed
8 years ago
0
Update set of cell cycle genes
#31
drisso
closed
8 years ago
1
Add examples to man pages
#30
drisso
closed
8 years ago
0
Default values for imputation and scaling?
#29
drisso
closed
8 years ago
1
conditional_pam & (max(eval_kclust) >= min(table(bio)))) throws warning when bio is null
#28
drisso
closed
8 years ago
0
Mention callr.org/install
#27
HenrikBengtsson
closed
8 years ago
2
R CMD check gives warning
#26
drisso
closed
8 years ago
1
develop branch: R CMD check fails
#25
HenrikBengtsson
closed
8 years ago
2
Robustness to BiocParallel
#24
drisso
closed
8 years ago
4
stability based on PAM
#23
drisso
closed
8 years ago
1
implement biplot
#22
drisso
closed
8 years ago
1
Give user the possibility to get both scores and normalized data
#21
drisso
closed
8 years ago
0
Replace weight arguments with a (weighted) projection function
#20
drisso
closed
8 years ago
1
weighted PCA
#19
drisso
opened
8 years ago
4
Shiny app
#18
drisso
closed
8 years ago
1
Finishing scone pipeline
#17
drisso
closed
8 years ago
1
Public data analysis
#16
drisso
closed
8 years ago
1
Prepare data
#15
drisso
closed
8 years ago
2
bug in scone_eval when batch is NULL
#14
drisso
closed
8 years ago
2
no_batch, no_uv ==> no_bio
#13
drisso
closed
8 years ago
1
error when eval=TRUE and only one method
#12
drisso
closed
8 years ago
1
do not compare bio and batch
#11
zhou13
closed
8 years ago
5
vignette
#10
drisso
closed
8 years ago
1
get_normalized wrapper function
#9
drisso
closed
8 years ago
5
Variance preserved measure for DE genes
#8
drisso
closed
8 years ago
3
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