YosefLab / scone

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scone() documentation error - bio argument #35

Closed majorkazer closed 8 years ago

majorkazer commented 8 years ago

In the scone function documentation it says under the bio argument: "Ignored, if adjust_bio=0."

However, setting adjust_bio=0 gives the following error: "Error in match.arg(adjust_bio) : 'arg' must be NULL or a character vector"

majorkazer commented 8 years ago

Setting both adjust_bio=NULL and bio=NULL seems to remove bio params from being set.

drisso commented 8 years ago

Sorry. This is a typo in the documentation. It should say if adjust_bio="no".

drisso commented 8 years ago

Closed in develop.

Note that the documentation was incorrect. When, adjust_bio="no", bio is not ignored, it's still used for the evaluation, but it's not part of the normalization model.