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Hi! We encountered some difficulties while predicting the starship transposons.
The parameter "-p" is the profile HMM file in starfish annotate module. I wonder how can I obtain the HMM files when us…
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To indicate genes that have a fitness change between different libraries, I am creating a volcano plot.
A dot represents a single gene. On the x-axis it shows the fold change in number of reads or in…
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I'm interested in particular GO terms in my input files, but they do not get included in the "main data table" (GO division)_(input filename). I understand that all original GO terms aren't actually a…
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see GO ticket go-ontology/issues/23135
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[Example FBco page](http://flybase.org/reports/FBco0000056.htm)
FBco entities are linked to alleles and not directly to transposons/insertions (@admclachlan to check this with FlyBase).
Some all…
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I've downloaded tephra_latest.sif and I'm running it on singularity 3.3.0. When I try a small test I get an immediate error:
```
> tephra all -c tephra_config.test1.yml
[ERROR]: 'debug' under 'al…
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We got back 150 bp read data from NovoGene from the SATAY experiments. Based on a manual inspection of the data, we see that:
- Each read also contains the sequence of the primers used for amplific…
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Hi;
thank you for your softwore ; my genome has much Retrotransposon,so, my genome position is not clear.But I still get this txt file,and this file give me the Centromere,It is that right?If thi…
frwjo updated
1 month ago
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We can discuss here different approaches on how to get fitness relative values from arbitrary units of normalized reads per ORF
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Hi,
Thank you for a cool tool!
I was just curious... when I tried to run the .py script to get the repeat masker file I needed to also install the following:
requests
colorama
tqdm
This wasn't…