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bvaldebenitom
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SoloTE
GNU General Public License v3.0
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Running SoloTE on BAM files
#49
singhbhavya
opened
1 week ago
5
Deletion mitochondrial gene
#48
liuweihahaha
closed
2 weeks ago
2
Questions about TE and Gene quantification
#47
liuweihahaha
closed
3 weeks ago
2
Dual mode failing due to missing single quote
#46
olivertam
closed
1 month ago
2
Failed to download reference
#45
WG20231
closed
2 weeks ago
3
Parameters for generating inputs for SoloTE
#44
hgiles5
closed
2 weeks ago
7
Much more cells were retained in the matrix
#43
XiaoyuZhan520
closed
2 weeks ago
5
Run SoloTE without gene quantification
#42
mathosi
closed
2 months ago
2
Pipeline failing due to KeyError: 4
#41
MujeebQadiri
closed
2 weeks ago
11
Question about output
#40
mousepixels
closed
2 weeks ago
3
I have some question. when I was running the ReadMtx function
#39
hzauleibowen
closed
5 months ago
0
I have some
#38
hzauleibowen
closed
5 months ago
0
additional dependencies?
#37
coraolpe
closed
2 weeks ago
13
Two questions about BAM files required for soloTE
#36
Taoo777
closed
2 weeks ago
1
Error running SoloTE v 1.09: FileNotFoundError: [Errno 2] No such file or directory: 'TN_allcounts.txt'
#35
t1nnenissen
closed
2 weeks ago
8
running SoloTE on scATAC data
#34
luisajamaral
closed
2 weeks ago
4
Issue downloading hs1 genome
#33
ijeomameremikwu
closed
1 month ago
3
soloTE for Smart-Seq2
#32
gabrielelubatti
closed
2 weeks ago
3
SoloTE indexer error
#31
frentzeperis
closed
2 weeks ago
9
SoloTE 1.09 Issue ValueError: Length mismatch: Expected axis has 4 elements, new values have 6 elements
#30
BrunoGuillotin
closed
2 weeks ago
8
Version package release with License file
#29
jayramr
closed
2 weeks ago
6
SoloTE Pipeline Not Working
#28
Sandman-1
closed
2 weeks ago
24
Gene Expression Counts in Addition to Transposable Elements in a Count Matrix
#27
mitra-frn
closed
9 months ago
2
grep: SAMPLE1_allcounts.txt: No such file or directory
#26
HannePuype
closed
9 months ago
3
pandas error
#25
liuyuchenlab
closed
10 months ago
3
Please add a license.
#24
fw262
closed
10 months ago
1
Pandas EmptyDataError: No columns to parse from file
#23
annabeltramini
closed
11 months ago
8
Scanpy error when using sc.read_10x_mtx()
#22
wbrett87
closed
1 year ago
4
Error with SoloTE_1.08
#21
kimal999
closed
1 year ago
1
Cells missing when I compare classical analysis VS SoloTE ?
#20
wjbsb
closed
2 weeks ago
5
A question about genes + TE x cells
#19
s2hui
closed
1 year ago
5
Interpreting the results table
#18
yeroslaviz
closed
1 year ago
2
ERROR: Requested column 3, but database file - only has fields 1 - 0.
#17
s2hui
closed
2 weeks ago
8
SoloTE_Home variable empty
#16
s2hui
closed
2 weeks ago
6
Re: TE file, score optional
#15
s2hui
closed
1 year ago
2
Error running soloTE : "ERROR: Requested column 3, but database file - only has fields 1 - 0"
#14
yeroslaviz
closed
1 year ago
18
"dual" option to include reads mapped to coding genes in TE quantification
#13
ss6025
closed
1 year ago
3
Potential bug with countpercell step
#12
olivertam
closed
1 year ago
4
Do I need the absolute path for the TE BED file?
#11
olivertam
closed
1 year ago
2
Pandas also required for installation
#10
olivertam
closed
1 year ago
1
SoloTE 1.04 and cellRanger bam file
#9
IStevant
closed
1 year ago
15
samtools errors(ERROR: Requested column 3, but database file - only has fields 1 - 0.)
#8
ertakeuchi
closed
1 year ago
27
Some required files were not written.
#7
Zhangcy018
closed
1 year ago
11
CellRanger bam file
#6
A1aNNN
closed
1 year ago
2
Test Data
#5
A1aNNN
closed
1 year ago
2
Can I use SoloTE to quantify human endogenous retrovirus in Single cell
#4
biohiran
closed
1 year ago
12
what samtools version did you guys use?
#3
hoangmgh
closed
1 year ago
13
Run fails after 1 hour
#2
JBreunig
closed
1 year ago
13
Mm10 and Hg38 *rm.out files
#1
JBreunig
closed
1 year ago
2