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Hi,
I am trying to write sql to select only certain fields from a nested document in the query result. I tried this for one field and it seemed to work correctly
select Tumors[*].primarySite fro…
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Dear Fabian,
Hi Fabian.
I have recently used HD-GLIO to segment tumors in my dataset inputs (t1, t1-ce, t2, t2-flair), and the segmentation worked well. However, I noticed that the resulting se…
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Hi,
I tried running as per the instruction. all i get is this error
`Use of uninitialized value $tumor in concatenation (.) or string at /root/CNVkit_pipeline/lib/Module/CNVkit.pm line 61.`
Wo…
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Thank you for your fantastic work!
I have some minor questions.
It seems that the heatmaps you show in the paper are post-processed.
First, the heatmaps you show are only part of the slide rather…
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Hi everyone,
I have received this error several times when running bcbio with a PON for mutect. It looks like too many instances are trying to access this file? I'm not sure what is causing this or…
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Hello,
I'm currently examining the possibility of reproducing your results. I understand your method comprises two stages. However, the execution instructions for Stage 1 / Phase 1 of your model se…
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I found an article called"Attention Gate ResU-Net for automatic MRI brain tumor segmentation"in IEEE,and I want to know if it is the corresponding article.I leave the abstract below,and I will be appr…
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It looks like the method was evaluated only on samples with high tumour purity.
> All epithelial cells in the metastasized tumor P6198 are malignant cells. The three primary tumors (P5847, P5931, and…
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Hi everyone,
In semantic segmentation and specially in biomedical segmentation usually we use Dice loss layer as a loss function (presented here:https://arxiv.org/pdf/1606.04797.pdf ), because has …
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Dear Clair Team,
I am a member of the longphase development team. Recently, while using ClairS and studying related literature, I have observed some results that raised a few questions I'd like to …