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How would someone extract the schema specific data needed in order to populate lists of all of the possible values for the pathological, and clinical values for the T, N, M, and Stage Group fields? S…
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The last round of review highlighted the need for a relationship between artifacts where one influenced the creation of the other - to enable inference of 'transitive credit' (a key use case for our m…
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Hi,
I'm hoping to separate inversion calls if there is support for more than one strand orientation. However, I'd like to be able to track the number of SR and PE reads supporting the different str…
mej54 updated
6 years ago
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I've been playing around with the bulk tissue simulation and the detailed oxygenation simulation and am concerned with some of the data I am getting. My goal was to try and replicate some of the resul…
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I've spent the last two weeks trying to get Weaver to run on COLO829 and I'm still failing. How exactly is a matched normal used by Weaver?
I have encountered the following issues in my attempts …
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Request to have the same feature as in MIP/SCOUT where all possibly compound variants are uploaded when looking at one variant. Including VAF-data....
![image](https://user-images.githubusercontent…
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Hi,
thank you for your super-interesting tool.
I have some questions about the snakemake_config.yaml (If I plan to run all pipeline together using snakemake)
1. This file has to stay in the IRI…
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Completed in branch?
- [x] `TLOD` (INFO) needs to be rendered as `t_lod_fstar` (not to be confused with the filter of the same name).
- [x] `NLOD` (INFO) needs to be rendered as `n_lod`
- [ ] `--colla…
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## Is your feature request related to a problem? Please describe.
Slicer's Colors module handles color tables but it can only store label value, name, color, and opacity. There is a growing need fo…
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library(fishHook)
library(gTrack)
library(rtracklayer)
mutations = dt2gr(fread('test_150_maftools.maf'))
genes = gr.sub(import('gencode.v27.annotation.gtf'))
genes = genes %Q% (gene_ty…