broadinstitute oncotator issues

broadinstitute / oncotator

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Bump numpy from 1.11.0 to 1.22.0

#380 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.11.0 to 1.21.0

#379 dependabot[bot] closed 2 years ago
1
the web interface is not available

#378 DexinYang1998 opened 3 years ago
0
Deprecating funcotator since it's not supported anymore.

#377 jonn-smith closed 4 years ago
0
Issue with new created datasource

#376 amomin-pact opened 5 years ago
0
Potentially something wrong with the current DB pack?

#375 JohnMCMa opened 5 years ago
9
COSMIC wrong annotation

#374 romagnolid closed 5 years ago
2
UniProt 2014_12 not found in uniprot ftp site

#373 kylec opened 5 years ago
0
Fixed README to compensate python3 syntax error.

#372 soymintc opened 6 years ago
3
Default Datasource download failed

#371 fjptwenger opened 6 years ago
1
index out range

#370 bioinfo-dirty-jobs opened 6 years ago
4
error on conotator annotation

#369 bioinfo-dirty-jobs opened 6 years ago
7
Release 1.9

#368 kubranarci opened 7 years ago
0
Release 1.9

#367 LeeTL1220 closed 7 years ago
1
pysam 0.9.0 requirement

#366 crutching opened 7 years ago
0
Is really only enum34-1.1.2 supported

#365 mmokrejs opened 7 years ago
1
Installation fails due to python's "SyntaxError: invalid syntax"

#364 mmokrejs opened 7 years ago
1
Kitematic/Console installation fails

#363 leiendeckerlu opened 7 years ago
1
Can we distribute the Oncotator through Bioconda?

#362 holtgrewe opened 7 years ago
0
Oncotator installation

#361 kamnax opened 7 years ago
0
Ll vcf to vcf

#360 LeeTL1220 closed 7 years ago
0
Ll vcf to vcf

#359 LeeTL1220 closed 7 years ago
0
Installation v1.9.2.0 on Ubuntu 14.04.05 failed systematically

#358 imbeaud opened 7 years ago
4
dbSNP_RS seems to not be annotated with Oncotator 1.9.1 (Broad Internal)

#357 brendanreardon opened 7 years ago
1
Docker image broadinstitute/oncotator:1.9.0.0 doesn't have a working ENTRYPOINT or CMD.

#356 alanhoyle closed 7 years ago
3
Cache filename too long?

#355 lebolo opened 8 years ago
2
Malformed VCFs don't generate an error message.

#354 alanhoyle opened 8 years ago
2
Make the source for the web API version available.

#353 alanhoyle closed 8 years ago
1
Make the source for the web API version available.

#352 alanhoyle opened 8 years ago
6
Bio.Data.CodonTable.TranslationError

#351 ycl6 opened 8 years ago
2
initializeDataSource.py dies if the --ds_foldername is an absolute path.

#350 alanhoyle opened 8 years ago
2
Oncotator VCFInputCreator does not handle SVs gracefully.

#349 LeeTL1220 opened 8 years ago
0
Docker build fails on Step 8 : RUN cd oncotator/ && python setup.py install

#348 alanhoyle closed 8 years ago
22
Support spanning deletions in VCF input

#347 LeeTL1220 opened 8 years ago
0
Fix Travis CI

#346 LeeTL1220 closed 8 years ago
2
Cannot overwrite annotations when VCF is input

#345 LeeTL1220 closed 8 years ago
1
Issue 343 fix ex ac ds

#344 LeeTL1220 closed 8 years ago
23
Cannot parse ExAC VCF

#343 LeeTL1220 closed 8 years ago
3
Open File Descriptors Issue

#342 jacmarjorie closed 8 years ago
8
Oncotator incorrectly alters reference allele from malformed VCF indels

#341 crutching opened 8 years ago
0
Oncotator input VCF REF/ALT alleles do not match output alleles

#340 crutching closed 8 years ago
6
converter from VCF to oncotator input format

#339 rgarcia-herrera closed 8 years ago
1
Update Dockerfile to fix `pysam==0.7.5` requirement

#338 die4live closed 8 years ago
4
aliased fields in defaults file overwrite populated input fields

#337 dheiman opened 9 years ago
0
Validation Alleles set as "." or "-"

#336 Ryan-Singh opened 9 years ago
1
Update README

#335 raonyguimaraes closed 8 years ago
0
Please set zip_safe to False in setup.py

#334 holtgrewe opened 9 years ago
0
Webservice HGVS BRCA1 c.3909dupT incorrect

#333 inodb opened 9 years ago
1
Oncotator lookup in VCF may not be correct

#332 LeeTL1220 opened 9 years ago
0
Improving ONPCombiner's attribute merging

#331 lbergelson closed 9 years ago
3