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## Bug report
### Expected behavior and actual behavior
Sometimes join function fails matching entries with same key values. Tricky bit is that this happens most of the time but not always.
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## Image matching approaches
There are different ways to evaluate the match or overlap between 2 binary images, typically a proposed image (the segmentation we want to check) and a reference image (t…
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Hi,
thank you for providing this tool to simulate variation reference data.
I get a segmentation fault (core dump) when I run:
```
simuscop-master/bin/simuReads ./config_WES_TN.txt
Details of…
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hi everyone
I have no experience in programming but I have been trying to work with the Captk as an end user and use it in my project. I am going to describe some problem I have encountered with when…
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Dear Author, thanks for the nice work! My question is about the inference with point prompt. From the paper, ' For inference with point prompt, we calculate the center of the prompts and then crop a s…
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## 🚀 Feature
Crop labels to exclude background while showing thumbnails in layer list.
## Motivation
For radiological images, segmentation of tumor occupies a lot fewer voxels compared to the und…
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Hi Sachin - there's an error in utilities.py when running the segmentation model.
All you need to fix it is to add these lines:
y_true_pos = tf.cast(y_true_pos,'float32')
y_pred_pos =…
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Hello !
I use SimpleITK package on Python to study bio-architecture of segmented tumor cells. I would like to get convex hull all cells to compare it with segmentation to check complexity structure.…
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Hi, I am a graduate student who is trying to use nnUNet in Colab.
I tried to run nnUNet preprocessing on the Liver dataset in Medical Decathlon Dataset with the Google Colab. But I found I will alw…