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- It should be able to print table to file
- There should be an option to disable human readable base numbers (mbp, kbp)
- Numbers in the table should be colored according to a color scale (ex: gree…
ozcan updated
6 years ago
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Hello,
I am using Anvio 2.4.0 to run the following command on an amazon EC2 instance:
`anvi-interactive -p MERGED-SAMPLES/PROFILE.db -c anvio-contigs.db
`
It runs and throws the following er…
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when i run the command: anvi-run-ncbi-cogs -c seq1.db
Following error occur:
Config Error: At least one essential formatted file that is necesary for COG operations is not
where it…
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currently anvi'o pan and profile databases have a `clusterings` table that only supports newick formatted orders.
``` python
clusterings_table_name = 'clusterings'
clusterings_tabl…
meren updated
6 years ago
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Re: https://groups.google.com/d/msg/anvio/VUwoF7_jysU/CszZ9RjPBQAJ
meren updated
6 years ago
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Hi there,
I'm having an issue where every time I try to store a collection of PCs the server is abruptly terminated and no bins are saved. The last message I get is:
`A request to store 2 bins t…
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``` bash
anvio/tests/sandbox/test-output $ anvi-gen-contigs-database -f ../contigs.fa \
--external-gene-calls ../example_external_gene_cal…
meren updated
7 years ago
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Hi there,
I have been trying to run 'anvi-compute-completeness' on anvi'o 2.4.0-master, and got this error I though I should report:
```
TypeError: tuple indices must be integers or slices, not s…
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Hello there,
Running anvi'o 2.4.0 (conda create -n anvio240 -c bioconda -c conda-forge python=3.5.4 gs) on an Ubuntu 14.04 here. Is this a matter of updating a python library?
Following http://m…
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I recently learned that only 40% of my issues are being considered, yet I am trying my chances once again.
Would be great to summarize the number of reads/profile in the summary.
Tom