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Hi,
I already downgrade Matrix to version 1.6.1.1 and reinstalled irlba, but this error still comes up when I run FindNeighbors. does anyone encounter this problem?
thank you very much
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https://mp.weixin.qq.com/s/BJTbcJiIyZkO8AnhOd0Y-A
ixxmu updated
7 months ago
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https://mp.weixin.qq.com/s/ZCb-TkKZDvQB7L48OBR4uA
ixxmu updated
6 months ago
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Not really an Issue, but a question.
Was https://github.com/jsh58/Genrich considered as a method to contrast against in your paper? If so, why was it rejected?
FWIW I have used it as recommende…
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Hello, I have encountered some problems when I tried to install cisDynet.
The log file shown is:
Error: package or namespace load failed for ‘cisDynet’:
.onLoad failed in loadNamespace() for 'cisD…
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I have a merged Seurat object (6 samples) of multiome (GEx and ATAC) data:
```
An object of class Seurat
171105 features across 11666 samples within 4 assays
Active assay: peaks (88220 features,…
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I know this issue has been raised in other issues (#2501 #2530), but downgrading `jax` causes other packages in my environment to throw errors, which seems like a rabbit hole to go down. Are there pla…
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I'm trying to train an atac topic model for my dataset, and the gradient tuning step failed for my data after several tries experienced gradient overflow. I have around 33000 cells. I followed the fil…
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Hi，I have some probloms in Signac when running:
`NucleosomeSignal(object = obj)`
I got Error:
`Done Processing 145 million linesError: fragment file lines too long
Error in `[.data.frame`(co…
ZivTQ updated
10 months ago
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### Description of the bug
Hello,
This is my first time using nf-core/cutandrun, but I have been using before RNA-seq and ATAC-seq (both nf-core). In this case, I am using a ._csv_ file to indicate…