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First described here: #48
Here' an example output .gsa.out file from `calculate_conditional_geneset_enrichment` in MAGMA v1.09a.
[ieu-a-298.tsv.gz.35UP.10DOWN.Rbfox_16_pyrSS.gsa.out.txt](https:…
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https://mp.weixin.qq.com/s/u-0Pa7jXsaNUVx8oynLoxw
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s?__biz=MzI5NjUyNzkxMg==&mid=2247484442&idx=1&sn=016b12d91af43e16ac8731ccd154b4b2&chksm=ec43b55ddb343c4be1fb6f5f764a421889b8ba93e5784f4921a6f510ee3572c72d14c76059ae#rd
ixxmu updated
2 years ago
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For the following analysis could we add what the required fields are so I can begin to add stars next to them:
Single-cell (SCTK):
Seurat clustering
SCTK UMAP dimensional reduction
MAST Single-c…
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https://mp.weixin.qq.com/s/3ovfx-KEvE_yc8buq0SaKQ
ixxmu updated
2 years ago
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Enrichment with background population selected works for enrichment over named lists, but NOT enrichment over a set of IDs.
The demos below are yeastmine, since there is an easily identifiable lar…
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#### What analysis module should be updated and why?
From #1174,
> Replace all the instances of how we currently use the histology_label_color_table with this new method
The palettes hav…
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Hi,
I was wondering if it is possible to do gene set enrichment analysis with this package? It is my understanding that it is only doing over-representation analysis right now is that correct? Kind…
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I am curious what are there inside a feather file from the cistarget database?
Can you please explain what are there inside, and how we can read it?
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https://mp.weixin.qq.com/s/t0ZrkPX9yz6vaHouY33Ohg
ixxmu updated
2 years ago