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Hi,
I'm trying to assemble a plasmid with canu 1.7.1 on a linux cluster.
```
PATH="$PATH:/cfs/klemming/nobackup/m/mahpa906/snic2018-8-217/tools/canu-1.7.1/Linux-amd64/bin"
PBREADS=/cfs/klemm…
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I'm running the following command:
canu -p Non-Branching7runs -d ~/assemblies/Non-Branching7runs genomeSize=300m maxThreads=30 -nanopore-raw Allruns_highQuality-reads.fastq.gz
Bogart is failing. …
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Is it possible to export the assembly graph in GFA format?
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Hi, anybody would help me?
I have a problem with canu. I build a bash file, then I use "qsub" command to submit this task to our server. It always fails "Mhap overlap jobs failed, tried 2 times, givi…
KSL22 updated
6 years ago
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Hello, I am currently trying to run canu with the ecoli test data.
Unfortunately, the run doesn't seem not going through properly. Even though I wrote the exact sampe example code, I found from the t…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/zhangjunpeng411/miRSM
Confirm the following by ed…
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I've assembled the sequence step by step, and I have an issue at the second trim. error rate=0.039 command was successful complete. So, I don't know why this command couldn't run. Thank you
```
ca…
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Hello,
I ran Canu in the following way:
```
conda create --name canu171 canu
conda activate canu171
canu -d canu2 -p canu2 useGrid=true genomeSize=1.2g -pacbio-corrected pacbio-corrected/*.fast…
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Hi,
I was trying to use canu 1.7 to assemble my genome on the cluster from our university. After I ran the `canu -correct` step, I didn't get the right output. In the canu.07.out file under the can…
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After Canu was downloaded from https://github.com/marbl/canu.git and installed on Ubuntu-based desktop computer as instructed, I tried to check Canu program with test data from http://nanopore.s3.clim…