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Currently cBioPortal importer in MutationFilter.java ignores lots of mutations which could be interesting to the researchers. I've tried disabling it (i.e. allowing all mutations from the input files,…
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Thanks for your tool!
I tested it and compared the Bam file with Star. The variable number of cuts found using rmat is:
EventType EventTypeDescription TotalEventsJC TotalEventsJCEC Signif…
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Quick question/suggestion: is there a way to install hisat-3n via conda or plans to make a hisat-3n conda recipe? Would be very helpful for integrating into Snakemake alignment workflows
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Apr 19, 2024, 5:09 PM
We would like to try to do an experiment on Pegasis with NCBI's NT db, which is about 1.2 TB last time I checked. We have a filtered version of that which is about 1.1 TB that…
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Hello loompy,
Thank you for making such an amazing packge!
We’re unable to retrieve spliced/unspliced RNA from single nuclei isolation procedure of scRNA-seq Flex kit. Please find the attached fig…
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only rpb11 has this.
Check whether these are staying or going
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# BUG/ERROR report
## System information
### Tripal Version: 4.alpha2.dev docker
* PHP Version: 8.1.18
## branches
* tv4g1-issue1551-Add-chado-boolean-field
* tv4g1-issue1414-ChadoAnalysisDe…
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Hi! I have a protein file of whole genome of a perennial grass. I downloaded 10 plant species from NCBI and used orthofinder to extract SCO. they are generating SCO when I remove my species protein fi…
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I would like to suggest replacing the boolean representation of GPR associations with a true Gene-Protein-Reaction association schema.
Here are few reasons for this:
1. Gene expression is not bo…
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We have 2 terms for translational proof-reading (maintenance of translational fidelity)
GO:1990145 maintenance of translational fidelity
GO:0006450 regulation of translational fidelity
The…