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### 路由地址
/oup/journals
### 完整路由地址
/oup/journals/:name
### 相关文档
https://docs.rsshub.app/journal.html#oxford-university-press
### 预期是什么?
can work
### 实际发生了什么?
I input `/oup/jo…
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hello,
when I ran the code
$ emapper.py -m diamond -i pan_genome_reference.fa --itype CDS --translate -o panmaptoeggnog --data_dir /home/database/eggnog5/ --cpu 16
it got the error:
Traceback …
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Hey
Whenever I run ProjecTILS on a Seurat object with my T cells, the resulting file loses KLRC1 signal. It says there is no expression of it in any assay. I know from feature plots and gene expre…
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I downloaded the most recent version of eggnog-mapper available through conda and ran emapper.py with a .faa file as input.
I gave it the following options:
- use diamond blast
- ignore diamond…
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I have around 122 (so 122 orthologs) from 34 different genomes and I am trying to use the `-a` flag to collapse the gene trees into a phylogenetic tree with 34 nodes but it is not working. I just get …
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[QI0013_eggnog_prokkafaa.gff.xlsx](https://github.com/eggnogdb/eggnog-mapper/files/8096827/QI0013_eggnog_prokkafaa.gff.xlsx)
[QI0013_eggnog_genome.gff.xlsx](https://github.com/eggnogdb/eggnog-mapper/…
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Is it possible to send sequences directly to
https://www.ebi.ac.uk/Tools/hmmer/search/jackhmmer
and
https://www.ebi.ac.uk/Tools/sss/fasta/ directly from the sequence section as we do for blast?
…
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I'd like to be able to keep track of CDS & protein sequences throughout the trimming process, and I don't want to trim CDS sequences in a way that would introduce frameshifts (i.e., trimming at the co…
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Hello,
I'm trying to subtype (PAM50) mouse breast cancer samples (RNAseq) and I was wondering if Genefu accounts for the fact that the genes in mouse have different gene id compared to their human …
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Hello, I would propose to obsolete the following biosynthetic process terms:
- [x] GO:1900566 ‘chanoclavine-I biosynthetic process’
Chanoclavine-I is an intermediate in the biosynthesis of fumigac…