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carmonalab
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ProjecTILs
Interpretation of cell states using reference single-cell maps
GNU General Public License v3.0
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projection plot and recalculated embeddings do not seem quite aligned
#87
gianfilippo
opened
1 month ago
0
MulticoreParam() not supported on Windows, use SnowParam()
#86
reyeshdezosuna
opened
1 month ago
3
no slot of name "var.features" for this object of class "Assay5"
#85
apal6
opened
1 month ago
9
Radar doesn't show signatures
#84
itamuria
opened
2 months ago
1
Timeout on download
#83
apal6
opened
2 months ago
3
Radars don't show expressions
#82
itamuria
closed
2 months ago
2
scATAC-seq based references?
#81
jeremymsimon
opened
2 months ago
1
Error in match.arg while running Run.ProjecTILs
#80
Merguerrero
closed
2 months ago
2
Error while loading the refernce mouse TIL dataset
#79
itamuria
closed
2 months ago
2
problem in installation project TILS
#78
rezath17
opened
2 months ago
2
Error using the mouse CD8 T cell atlas (outdated Seurat data structure?)
#77
ycl6
closed
2 months ago
2
Question regarding min.conf threshold
#76
gsoriaa
opened
3 months ago
1
Unclosed radar plots for plot.states.radar
#75
DavidJDeGeorge
opened
3 months ago
2
Error in make.projection()
#74
wsullivan22
closed
3 months ago
5
Error while loading the refernce mouse TIL dataset
#73
Saumya513
closed
4 months ago
1
ProjecTILs.classifier errors with big data
#72
NoemieL
opened
5 months ago
4
using ProjecTILs for BPMC
#71
MWRR
opened
5 months ago
1
Human CD4 and CD8 original vs new annotation
#70
gianfilippo
closed
3 months ago
5
Projection of Proliferating T cells
#69
rana228
closed
5 months ago
9
Online dataset browser is currently inactive
#68
edridgedsouza
closed
6 months ago
2
make.reference function reports error
#67
LiHangzls
closed
3 months ago
1
Incompatibility with Seurat v5
#66
ElviMagda
closed
7 months ago
2
Unable to classify half of my CD8+ T cells using custom-built reference
#65
france-hub
closed
8 months ago
2
Error when trying ProjecTILs.classifier on object list
#64
halterc
closed
8 months ago
1
How to use Run.Projectils with Harmony.
#63
mckoch234
closed
8 months ago
1
How to use Run.Projectils for a merged dataset with SCT assay
#62
mckoch234
closed
5 months ago
3
Add option to plot.states.radar for unknown cell types?
#61
mschubert
closed
5 months ago
1
ProjecTILs.classifier do not return functional.cluster.conf slot in query object metadata
#60
JGarnica22
closed
10 months ago
1
speed up multiple projections by storing uncorrected PCA embeddings of ref
#59
sjcarmona
opened
1 year ago
0
Function error: ProjecTILs::FindAllMarkers.bygroup
#58
halterc
closed
9 months ago
1
Create map for macrophages
#57
halterc
closed
9 months ago
1
Building custom reference and retain the RNA assay
#56
WouterMidden
closed
8 months ago
1
No Run.ProjecTILs funtion
#55
zhao-xinlu
closed
1 year ago
1
Issue Making a Reference - Dimension is zero
#54
dkwon6
closed
8 months ago
3
Error: object 'ffi_standalone_check_number_1.0.7' not found
#53
dkwon6
closed
1 year ago
2
Human CD4 and CD8 TILs references
#52
gianfilippo
closed
1 year ago
1
error: could not find function "Run.ProjecTILs"
#51
ncedi12
closed
1 year ago
2
potential issue with merge.Seurat.embeddings
#50
gianfilippo
closed
1 year ago
2
Human CD4 and CD8 TILs references
#49
gianfilippo
closed
1 year ago
1
Enhancement: Status bar
#48
halterc
closed
1 year ago
0
Uninformative error if one sample contains no cells to project onto reference map
#46
halterc
closed
11 months ago
5
Package test failed
#45
gianfilippo
closed
1 year ago
2
BiocParallel errors
#44
gianfilippo
closed
1 year ago
1
Error in value[[3L]](cond) : Reference object ../ref_TILAtlas_mouse_v1.rds is invalid
#43
sethzima
closed
1 year ago
1
where to find the "functional.cluster"
#42
PingpingZheng
closed
1 year ago
2
unable to install scGate or ProjecTILs libraries
#41
ashkanshahbandi
closed
1 year ago
3
Error: BiocParallel errors
#40
fang-yulo
closed
1 year ago
2
ProjecTILs::Hs2Mm.convert.table generation
#39
Close-your-eyes
closed
1 year ago
3
Possibility to plot signatures scores in addition to individual genes in plot.states.radar
#38
kaizen89
closed
1 year ago
2
plot.states.radar does not work when query data not provided
#37
kaizen89
closed
2 years ago
1
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