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Thank you for creating the benchmark!
For DMS indels supervised bechmark, `ESM-1v Embeddings` model achieves SOTA results on the indels benchmark, outperforming `Tranception Embeddings` and `MSA T…
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Hi all,
I've tested progen2 on an antibody Fv for which we've also calculated Facebook's ESM log_likelihood stability values, and we see very little correlation between the two. I've tested it both…
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Hi Dr. Wang,
Sorry for submitting the issue to the wrong repo. I actually was using the script and model weights in this repo to reproduce your results in the NAR paper. The question remains the sa…
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@Ruoqiao2020 Hi, thanks for developing this tool!
When I run SPIDER with my own seurat object, the output seemed strange that only 1000 features of my seurat object were retained but obviously these…
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c_to_p fails for variant "NM_198180.2:c.408_410delGTG".
This is in-frame deletion that involves the termination codon, so I believe it is similar to issues #476, #449 and #525
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**Question**: Based on what is known of the likely Mechanism of Action, what is the best _in silico_ approach to generate a pharmacophore model?
**Ques…
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## Summary:
Message passing and feature aggregation are effective techniques for improving the quality of topic clusters in a graph-based topic modeling system. Message passing involves propagating …
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**Are you using the latest release?**
Using newest version to my knowledge
**Describe the bug**
When running 'funannotate annotate' "Parsing InterProScan5 XML file" returns as error "ValueError: …
cdixo updated
2 years ago
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# General Information
## Please paste a link to the paper or a citation here:
Title: A Survey on Applications of Artificial Intelligence in Fighting Against COVID-19
Link: https://arxiv.org/abs/2…
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Thank you for your outstanding work! I successfully ran the prediction model on the 3090Ti in the lab!
I predicted a 220AA protein and a small molecule compound, but when I extended the amino acid…