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**Describe the bug**
The value of alignment coverage is miscalculated.
**To Reproduce**
>lcl|NZ_CALUAQ010000001.1_prot_WP_278902228.1_145 [locus_tag=QDJ88_RS00725] [protein=hypothetical protei…
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Hi, David：
I want to use OrthoFinder with diamond v0.9.32.133 to do some research, but have a problem.here is my script:
export PATH=/gss1/home/hjb20181119/panyongpeng/ruanjian/OrthoFinder_sour…
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> Please provide us with the following information:
> ---------------------------------------------------------------
### This issue is for a: (mark with an `x`)
```
- [ x] bug report -> pleas…
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I am using the cloned repo as is and no changes are made initially. I try to knit index. Rmd. The pdf does not compile.
I get the following Errors in the Render window
> tlmgr: Remote database (…
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I'm not sure if this is already supported or if this is a feature request, but is there a way to create / utilize references like [described here](https://superuser.com/a/870509/74640) for Windows kee…
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.\mmseqs.bat --help
## Expected Behavior
```
MMseqs2 (Many against Many sequence searching) is an open-source software suite
for very fast,
parallelized protein sequence searches and clustering o…
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```
We need to be able to search for text in the current window (e.g. the
current chapter, dictionary entry, ...). Search should use a standard
highlighted incremental search and key sequence (scroll…
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**Describe the issue**
RepeatMaskerLib.embl is not built while configuring RepeatMasker-4.1.2-p1 and is requestrd by DateRepeats
```
rpm_maker:RepeatMasker/RepeatMasker-4.1.2-p1 > DateRepeats
I…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Current Behavior
`encrypt_selection` does this:
```python
selection_description_hash = selection_description…
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```
SELECT DISTINCT ?protein ?product_name ?dataset ?dataset_name ?expedition ?spectral_count ?protein_id peptide_count ?sequence ?ids
WHERE {
?protein a .
?protein ?p ?o…