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Need to discuss eligibility with SCEA.
1. cell_line -> hIPSC -> sequencing
2. single-cell library prep. method = Fluidigm C1-based library preparation
3. mixed sample types: primary & hIPSCs
P…
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editor preferred term: Ion Torrent Ion PGM
alternative terms: Ion PGM System, Ion Torrent PGM, Ion Torrent PGM System
textual definition: Ion Torrent Personal Genome Machine (PGM) is a reliable semi…
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https://www.genewiz.com/Public/Resources/Tools-for-Viewing-Sequencing-Data/
dridk updated
6 years ago
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Need to discuss with SCEA whether this dataset is eligible.
The dataset does not have raw sequencing files associated with it (managed access). Do the SCEA team accept projects with expression matr…
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**Description**
As a data wrangler wrangling a project with 10X 5' V(d)J data I need to determine the correct way of defining the experiment in our spreadsheet and determine whether any a…
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Hi,
Thank you developing the those useful APIs for Miniknow. I have computer A connected with Minknow and a computer B used to process the data. I am interested in monitoring the sequencing status…
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[SignalFlow](https://github.com/ideoforms/signalflow) can be used to do synthesis without SuperCollider. @jarmitage already tried this, and it looks like everything is working right out of the box. Ma…
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Show Cefas staff best practice on naming repos. The course also covers UEA students but I think this is important to teach as I see very generic repo names in CefasRepRes.
The [Cefas guidance](https:…
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Hello!
Recently I've had to sequence and analyse a RNA-Seq set from T. cruzi RNA. For that, I used Salmon in the alignment-independent mode (aligning to a reference transcriptome).
Typical issues as…
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Hi,
We recently ran TRUST4 on some 10x Genomics TCR data using the command
`trust4 -f hg38_bcrtcr.fa --ref human_IMGT+C.fa -1 input/YWI006-VDJ_S1_L001_R1_001.fastq.gz -2 input/VDJ/YWI006-VDJ_S1_L001…