-
I have a cohort of 4200 subjects that I was able to successfully run with 100G heap space on each chromosome in under 30 minutes each. Ancestry percentages match full-genome expected ancestry of about…
-
I am try to generate LD scores using below command
./ldsc.py \
--ref-ld-chr LDSCORE.1000G_AFR.tab.gz \
--out FG_T2D24 \
--rg FG.sumstats.gz,T2D_EUR.sumstats.gz \
--w-ld-chr LDSCORE.1000G_AFR.ta…
-
### Description of the bug
I have run PGSC_calc many times on different files but this is the only time I am running with liftover and with run_ancestry. Without run_ancestry, it runs fine. Otherwi…
-
gcp_sql_ssl_v1.yaml template:
Is looking for:
`asset.resource.settings.ipConfiguration.requireSsl == false`
but the CAI returns:
```
[
{
"name": "",
"asset_type": "sqladmin.g…
jdyke updated
4 years ago
-
Adjacent trees are highly correlated, with the difference being a few deleted/added edges. From one tree to the next, we only need to update the IBD matrix between pairs of leaves of subtrees rooted a…
-
**Is your feature request related to a problem? Please describe.**
Unit tests are great, stack traces are great, but they only give you a snapshot of a behavior that is unexpected and a function call…
-
```
In my mind there's two ways to go about this:
1) Create a class structure that mirrors the class structure of the entities to
be queried.
-This could cause compile errors if there are hidden (i.…
-
**Reported by spanchang02 on 2013-09-27 16:33**
The NVDA+T key reads the page title which is very good for non sighted users to determine "where am I?".
It will be very very useful if this was enhance…
-
I think in the interest of standardization, which would help keep the Tree walker maintenable and less bug prone, the tree walker should provide unified api interface to the wrapped component.
an …
-
Is there a method when simplifying a tree sequence to remove all unary nodes except the recombination nodes (a middle ground between ts.simplify(keep_unary=False) versus ts.simplify(keep_unary=True))?…