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Hello all,
Thanks in advance for your time. I'm having linking output with this [gunzip cwl](https://github.com/Sage-Bionetworks/SMC-RNA-Examples/blob/master/rsem/cwl/gunzip.cwl) in a CWL workflow.…
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This is for @psaffrey-illumina, myself, and others to co-ordinate adding support for the Directory type as proposed in https://github.com/common-workflow-language/common-workflow-language/issues/172
…
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[Here](https://docs.google.com/spreadsheets/d/1od5J4I_Rbtqx-A4PEJOmDW7EZfqPXumYGg2iiibSv1U/edit#gid=501875787) is a list of things we need including food. Feel free to edit.
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**Jose Da Silva ** created a patch on 2005-07-23 06:35:12 UTC**
*(Orig. from https://sourceforge.net/p/aspell/patches/115)*
Hopefully did this correctly.
Makefile.am appears to apply for both 0.6…
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Ship a CWL module description file in the root of the repository. Anyone who wants one will then find it and it will make their life easier. See [here](https://github.com/common-workflow-language/work…
ewels updated
8 years ago
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When using the Dockstore CLI it would be nice to be able to manually specify a local CWL for use with the launch feature:
'''
ubuntu@brian-pcawg-bwa-testing:~/gitroot/CGP-Somatic-Docker$ dockstore la…
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The previous version of `cwl-runner` I could do this:
```
cwl-runner cat.cwl --input README.md
```
using the following workflow (performs a simple `cat`):
```
#!/usr/bin/env cwl-runner
cwlVersion:…
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Options:
1. Cite the [2015 BOSC talk](http://f1000research.com/slides/4-278):
> Amstutz P, Tijanić N, Soiland-Reyes S et al. Portable workflow and tool descriptions with the CWL (Common Workflo…
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As discussed in today's videochat:
1. The spec in draft-4 is clarified: filenames are not guaranteed to be preserved; `cwltool` scrambles file names to enforce this
2. As in 1, but a flag is added to …
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`cwltool --update` does not seem to accept `draft-3` as a valid version (and it only updates as far as dev4) which is odd because it seems like it should https://github.com/common-workflow-language/cw…