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I am not finding the FASTA download to be very accessible in the meaning of FAIR data, see e.g.https://en.wikipedia.org/wiki/FAIR_data
I would like to have a simple easily discoverable URL to downl…
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Hi all, I have difficulty defining an output file for my relative abundance run, any hints please what am I missing here?
```
coverm genome --genome-fasta-extension fasta --genome-fasta-files *.f…
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Hello, I have installed bio_embeddings with 'pip install bio_embeddings-0.2.2-py3-none-any.whl', and when i try to run the notebooks/embed_fasta_sequences.ipynb,it shows me:
ImportError: cannot impo…
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Is the error because there is no difference between mouse datasets?
No id variables; using all as measure variables
out of 4725 with nonzero total read count
adjusted p-value < 0.1
LFC > 0 (u…
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Hi,
I'm trying to use the COCOS plugin with vep (version 95) and it doesn't seem to be producing the cocos.fasta file that is expected when successful. No vep errors or relevant warnings appeared …
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Hello!
I address you because I want to perform a little experiment using graphs. I would like to make a string graph from several similar reference genomes. Once made, I would like to convert the str…
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Interoperability with BioPython may be the easiest way to enable this.
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It seems that required DBs for lotus are missing on the EU Galaxy instance:
```
WARNING:: Requested DB for uchime ref at
DB//ITS_chimera/uchime_sh_refs_dynamic_original_985_11.03.2015.fasta
does n…
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Hi,
I was able to successfully install and test run INTEGRATE-Neo on example2 (using GRCh38).
My issue is that when I try to run this on my dataset (which is processed using GRCh37), I get empty…
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I'm not sure if it is intentional or not, but [`fasta::IndexRecord`](https://github.com/rust-bio/rust-bio/blob/b6cb8699fb7f16e741a7840f5bcc2d850938a37a/src/io/fasta.rs#L575) is currently private. Acce…